Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00313 ATGAAGCGTAACCTCCTGATCTTGTTGCCCTTCCCGACTTCGTACATTCCCCACGAGAAAGCTCCAAAAGCCGTGAGAAAAATATCAATGGCGCTTGGGCCTTTGGTGGGGATCCGGCGAGCATATAACGAACGGGAGAAAACACACCGGCCGGTGGTCCATCTTGAAGGATCGGCATGGCCTTCACGCTCACCATTCCCGGTCATTAGTAGATTGAGTTGGAACAGAAATTATGCAGCCAAAGACATTAAATTTGGCGTGGAGGCTCGAGCTCTCATGCTTAAGGGAGTTGAGGAACTTGCAGAAGCAGTTAAAGTTACAATGGGTCCTAAGGGACGTAATGTGGTGATTGAACAAAGCTATGGGGCCCCAAAAGTGACAAAAGATGGTGTAACTGTTGCCAAGAGCATTGAGTTCAAAGATAAAGTCAAGAATATTGGCGCTAGCCTTGTTAAACAGGTTGCTAATGCAACCAATGATGTGGCAGGCGATGGGACCACATGTGCTACAGTCCTTACGCGTGCAATATTTGCTGAAGGGTGCAAGTCAGTTGCTGCAGGGATGAATGCAATGGACTTAAGACGAGGCATCACCATGGCAGTTGATGCTGTGGTAACAAACTTAAAGAGCAGAGCACGAATGATTAGCACATCTGAAGAGATAGCTCAGGTGGGAACAATATCCGCAAATGGAGAAAGGGAAATTGGTGAGCTGATTGCCAAGGCTATGGAAAAGGTTGGAAAAGAGGGAGTCATTACAATCTCAGATGGTAAAACATTGTATAATGAGTTGGAAGTTGTGGAAGGAATGAAATTAGACAGGGGATACATATCTCCTTATTTCATTACAAACCAAAAAAACCAAAAATGTGAATTGGAAGATCCCATTATTCTGATCCATGAAAAGAAAATATCCAGCATTAATGGAGTTGTAAAAGTTTTAGAATTAGCTCTGAAGAGACAAAGACCCTTGCTCATTGTTGCTGAAGATGTTGAAAGTGATGCGCTGGCCACCCTTATTCTAAATAAACTTCGTGCAGGGATCAAGGTATGTGCTATTAAAGCTCCTGGTTTTGGGGAGAACAGGAAGTCCAATCTCCTAGACCTTGCTGTGCTCACAGGGGGTGATCTTATTACCGAAGAGCTTGGTTTAAATCTCGACAAAGTGGACCTAGATATGCTTGGTACTTGCAAGAAGGTCACTATTTCCAAGGATGACACAGTTATCCTTGATGGTGCTGGTGACAAAAAAGCTATTGAGGAAAGATGTGAACAGATAAGGTCTGGAATAGAGTTGAGCACTTCTGATTATGACAAAGAAAAGTTACAAGAGAGATTAGCTAAGCTTTCTGGTGGAGTGGCTGTATTAAAGATTGGGGGTGCCAGTGAAGCAGAAGTTGGTGAGAAGAAGGATAGAGTAACAGATGCGTTGAATGCCACCAAAGCTGCTGTAGAAGAGGGCATTGTTCCTGGTGGTGGTGTTGCTCTTCTTTATGCGGCGAAAGAGTTGGAGAAACTCCCAACTGCTAACTTTGATCAGAAAATAGGAGTCCAGATTATTCAAAATGCTCTAAAGACTCCTGTCCACACTATTGCTGCTAATGCTGGGGTTGAGGGAGCTGTTGTAGTTGGTAAGCTGTTAGAGCAAGATAACCCGGACCTTGGCTACGACGCTGCCAAAGGTGAATATGTCGACATGGTCAAGGCTGGAATAATAGATCCATTGAAAGTAATTAGGACTGCCTTAGTCGATGCTGCAAGCGTTTCATCTTTGATGACGACAACCGAAGCAATCGTTTCAGAACTCCCGAAGGATGACAAAGAGGCTCCATCAATGGGTGGTGGCGGCATGGGAGGAATGGATTATTGA 1869 44.41 MKRNLLILLPFPTSYIPHEKAPKAVRKISMALGPLVGIRRAYNEREKTHRPVVHLEGSAWPSRSPFPVISRLSWNRNYAAKDIKFGVEARALMLKGVEELAEAVKVTMGPKGRNVVIEQSYGAPKVTKDGVTVAKSIEFKDKVKNIGASLVKQVANATNDVAGDGTTCATVLTRAIFAEGCKSVAAGMNAMDLRRGITMAVDAVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITISDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELEDPIILIHEKKISSINGVVKVLELALKRQRPLLIVAEDVESDALATLILNKLRAGIKVCAIKAPGFGENRKSNLLDLAVLTGGDLITEELGLNLDKVDLDMLGTCKKVTISKDDTVILDGAGDKKAIEERCEQIRSGIELSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYAAKELEKLPTANFDQKIGVQIIQNALKTPVHTIAANAGVEGAVVVGKLLEQDNPDLGYDAAKGEYVDMVKAGIIDPLKVIRTALVDAASVSSLMTTTEAIVSELPKDDKEAPSMGGGGMGGMDY 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3802429 3808044 + BLOR00313 Blo01g00313 54753

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00313 622 PANTHER CHAPERONIN CPN60-2, MITOCHONDRIAL 65 620 - -
Blo01g00313 622 Hamap Chaperonin GroEL [groEL]. 79 620 IPR001844 GO:0042026|GO:0140662
Blo01g00313 622 ProSitePatterns Chaperonins cpn60 signature. 482 493 IPR018370 GO:0005524|GO:0006457
Blo01g00313 622 MobiDBLite consensus disorder prediction 602 622 - -
Blo01g00313 622 CDD GroEL 81 601 IPR001844 GO:0042026|GO:0140662
Blo01g00313 622 PRINTS 60kDa chaperonin signature 345 368 IPR001844 GO:0042026|GO:0140662
Blo01g00313 622 PRINTS 60kDa chaperonin signature 427 452 IPR001844 GO:0042026|GO:0140662
Blo01g00313 622 PRINTS 60kDa chaperonin signature 160 187 IPR001844 GO:0042026|GO:0140662
Blo01g00313 622 PRINTS 60kDa chaperonin signature 104 130 IPR001844 GO:0042026|GO:0140662
Blo01g00313 622 PRINTS 60kDa chaperonin signature 475 496 IPR001844 GO:0042026|GO:0140662
Blo01g00313 622 SUPERFAMILY GroEL-intermediate domain like 215 282 IPR027410 -
Blo01g00313 622 TIGRFAM GroEL: chaperonin GroL 80 604 IPR001844 GO:0042026|GO:0140662
Blo01g00313 622 Gene3D GroEL 269 450 IPR027409 -
Blo01g00313 622 Gene3D - 214 487 IPR027410 -
Blo01g00313 622 Pfam TCP-1/cpn60 chaperonin family 100 601 IPR002423 GO:0005524
Blo01g00313 622 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 65 620 - -
Blo01g00313 622 SUPERFAMILY GroEL apical domain-like 262 453 IPR027409 -
Blo01g00313 622 Gene3D - 83 599 IPR027413 -
Blo01g00313 622 SUPERFAMILY GroEL equatorial domain-like 83 599 IPR027413 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00313 K04077 groEL, HSPD1; chaperonin GroEL [EC:5.6.1.7] - zju:107408563 982.245
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g00313 Blo12g00132 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00313 Blo-Chr1:3802429 Blo05g00054 Blo-Chr5:529317 0 dispersed
Blo01g00313 Blo-Chr1:3802429 Blo12g00132 Blo-Chr12:9247900 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g828 Blo01g00313 Blo12g00132 Bda03g01108 . Bpe04g01053 . Bma04g01034 Bma05g01268 . . . . . . . . . . . . . . . . Cla06g00710 Cam06g0764 Cec06g0768 Cco06g0779 Clacu06g0752 Cmu06g0735 Cre06g1515 Cone14ag0201 Cone15ag0219 . Cone4ag0377 . . . . . . . . Bpe05g01123 . . . . . . . . . . . Cpe17g00226 Bhi12g01535 . . Lac12g2109 . . . . . . . . . . . . . Cme05g00632
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000827 3 3 3 3 3 3 4 3 3 2 3 3 4 2 3 4 3 5 4 3 3 2 3 3 3 2 3 4 2 2 91
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00313 Blo_Chr01 FPKM 4.702836 4.698825 4.689337 5.16398 7.595185 8.192502 8.97104 21.881166 20.637205 23.810074