Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00317 ATGGTGATTCAGCTGAAACAAGAGTTAATCATGAATAGCTTCAAAACCATCGATGGCCGTGGGGTCAACGTCCACATCGCAAATGGAGCTTGTATTACTATCCAATACATCACCAATGTCATCATCCACGGCCTCCACATCCACGATTGCAAGCCCACTGGCAACGCCATGGTGAGGAGCTCGCCCAGCCATTTCGGGTGGAGGACGATGGCTGATGGCGACGGCATCTCCATTTTCGGGTCGAGCCATATATGGGTTGATCACAACTCGCTTTCTCACTGCGCTGATGGTCTTGTTGACGCTGTGATTGGCTCAACTGCAATTACAATTTCAAACAATCACTTCACCCACCACAACGAGGTGATGCTACTGGGTCACAGTGATTCGTACACAAAAGATAAGGATATGCAAGTCACCATCGCTTACAACCATTTTGGAGAAGGACTCATTCAGAGAATGCCAAGGTGTAGACATGGGTATTTCCATGTGGTGAACAATGACTACACCCACTGGGAAATGTACGCAATTGGGGGAAGTGGCAACCCCACCATCAACAGCCAGGGCAACAGATATGCAGCTCCATCAAACCCCTTTGCAAAGGAGAAGAAACTCATAATGCGGTTTCTGAAAATCTGTCCTTTGCAGGTGACAAAGAGGGTTGAAACAGCAGAAAGCCAGTGGAAGAACTGGAACTGGAGATCAGAGGGAGACATGTTACTAAACGGAGCATATTTCACTCCGTCTGGCGCTGGAGCTTCTTCAAACTACGCCAAGGCCTCAAGCTTGGGCGCTAAGTCTTCCTCCATGGTTGCCTCCATTACGTCCGGCGCTGGTGCTCTTCCCTGCCGCAGAGGCCATCAGTGTTAG 867 49.48 MVIQLKQELIMNSFKTIDGRGVNVHIANGACITIQYITNVIIHGLHIHDCKPTGNAMVRSSPSHFGWRTMADGDGISIFGSSHIWVDHNSLSHCADGLVDAVIGSTAITISNNHFTHHNEVMLLGHSDSYTKDKDMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSGNPTINSQGNRYAAPSNPFAKEKKLIMRFLKICPLQVTKRVETAESQWKNWNWRSEGDMLLNGAYFTPSGAGASSNYAKASSLGAKSSSMVASITSGAGALPCRRGHQC 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3884213 3885278 - BLOR00317 Blo01g00317 54757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00317 288 PANTHER PECTATE LYASE 18-RELATED 1 285 IPR045032 GO:0030570
Blo01g00317 288 SMART amb_all 1 197 IPR002022 -
Blo01g00317 288 PANTHER PECTATE LYASE 1 285 - -
Blo01g00317 288 PRINTS Pollen allergen Amb family signature 259 282 IPR018082 -
Blo01g00317 288 PRINTS Pollen allergen Amb family signature 174 193 IPR018082 -
Blo01g00317 288 PRINTS Pollen allergen Amb family signature 152 171 IPR018082 -
Blo01g00317 288 PRINTS Pollen allergen Amb family signature 8 24 IPR018082 -
Blo01g00317 288 PRINTS Pollen allergen Amb family signature 72 93 IPR018082 -
Blo01g00317 288 Pfam Pectate lyase 8 189 IPR002022 -
Blo01g00317 288 Gene3D - 1 281 IPR012334 -
Blo01g00317 288 SUPERFAMILY Pectin lyase-like 1 288 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00317 Blo-Chr1:3884213 Blo10g00608 Blo-Chr10:18580162 1.39E-178 dispersed
Blo01g00317 Blo-Chr1:3884213 Blo12g00125 Blo-Chr12:8720829 0 wgd
Blo01g00317 Blo-Chr1:3884213 Blo07g01064 Blo-Chr7:30485130 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00317 K01728 - qsu:112029642 526.939