Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00323 ATGATCAGCTCCGAGCCGCCTCTCAAGGAACCACTGTCTGACTCTGAACCTCTCCGATCGCCAGGAGCTTTTTGTGTCGTTGCAGTAGAATCTGCGGGCAGACAAATTCCACTTGCCTTTCTTGATCGAACAAAGGAAGATTTCAACGAAAGATATGGTGGAGGGAAAGCTGCAACTGCTGTTGCTAACAGCTTGAACAAAGAATTCGGGCCCAAATTGAAGGAGCAAATGCAATACTGTGTTGATCATCCTGAGGAGATCAACAAACTTGCCAAAGTAAAAGCTCAGGTCTCTGAAGTCAAAGAATCAGAGGTGGGTGGGTGGGTGGGTGGGTCGGTCATTGATATGCCTCCGCCAACAGACTGGTCTGCAGACAAGGCTTCTCTTGGTTATATTCCATTAATTCCCCAGAATTCACTTCTGCTCCCATCAACTACAATTGCTTCTTTTTCAAGTGTAGAGAAGAACATGGTGACCGTTGAGGAAGTTTTCAGGGCTCAGAGGGCAGGCGGTCCGGCCACCGTCTTGGCCATTGGAACAGCCAACCCGCCGAATTGCGTTGATCAGAGCACTTATCCTGACTTCTACTTTCGCGTCACTAACAGTGAACACAAAACTGAACTCAAGGAGAAATTCAAGCGGATATGTGACAAGTCGATGATCAAGAAGAGGTATATGTACTTGACGGAGGAGATTCTGAAGAACAACCCTGAGGTTTGTGCCTTCGACGCGCCTTCTCTTGAAACGAGACAAGACATCGGGAAGTTGGAGGTTTCCCGTCTGGGAAAAGAGGCGGCAGTGAAAGCTATAAAGGAATGGGGGCAGCCCAAATCGAAGATTACCCACGTCATTTTCTGCACGACCACCAGCATCGATATGCCCGGAGCTGACTACCACCTCACCATGCTCCTAGGCCTCCACCCGTCAGTCAAACGCCTTATGATTTACCAGCAAGGTTGCTTCGCCGGCGGTACCGTTCTCCGAGTGGCCAAGGATCTGGCTGAGAACCACAAAGGCGCTCGTGTTCTTGTGGTTTGCGCTGAGATGACCACAGTCACGTTCCACGGTCCGAGTGAAAGCCACATTGACAGTCTCGTCGCACAGGCTCTCTTCGGCGACGGCGCGGCTGCTCTCATCGTCGGCTCTGATCCGATCCCTGAAGTGGAGAAACCATTGTTCCAAATAGTCACCGCCTCTCAGACTATTCTTCCAGACAGCGATGAAGCTATCGTTGGCCGTCTCAAGGAAGCCGGCCTGACCTTGAGCCTTCTGAAAGACGTCCCCGCTTTGATCACAAAGAACATCGAGGCAAGCTTGGTCGAGGCGTTCAAGCCATTAGGTATCTCAGATTGGAACTCCATCTTCTGGATCGTCCACCCCGGCGGTCGGGCAATCCTGGACAAGGTGGAGCAGAAACTGGGACTGAAAGAGGAGAAAATGCGAGCAACCAGACAAGTTCTATCAGATTACGGCAACTTATCCAGCGCTTGCGTTTTCTTCATCATGGACGAGATGAGGAAGAAATCGGTAGTTGAAGGGCTGAAAAGAACCGGCGAAGGACTGGAGTGGGGAGTGCTGTTCGGGTTCGGGCCCGGCCTCACCGTGGAGACGGTGGTTCTCCACAGCGCCGCCGTTTAA 1638 51.59 MISSEPPLKEPLSDSEPLRSPGAFCVVAVESAGRQIPLAFLDRTKEDFNERYGGGKAATAVANSLNKEFGPKLKEQMQYCVDHPEEINKLAKVKAQVSEVKESEVGGWVGGSVIDMPPPTDWSADKASLGYIPLIPQNSLLLPSTTIASFSSVEKNMVTVEEVFRAQRAGGPATVLAIGTANPPNCVDQSTYPDFYFRVTNSEHKTELKEKFKRICDKSMIKKRYMYLTEEILKNNPEVCAFDAPSLETRQDIGKLEVSRLGKEAAVKAIKEWGQPKSKITHVIFCTTTSIDMPGADYHLTMLLGLHPSVKRLMIYQQGCFAGGTVLRVAKDLAENHKGARVLVVCAEMTTVTFHGPSESHIDSLVAQALFGDGAAALIVGSDPIPEVEKPLFQIVTASQTILPDSDEAIVGRLKEAGLTLSLLKDVPALITKNIEASLVEAFKPLGISDWNSIFWIVHPGGRAILDKVEQKLGLKEEKMRATRQVLSDYGNLSSACVFFIMDEMRKKSVVEGLKRTGEGLEWGVLFGFGPGLTVETVVLHSAAV 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3934373 3942382 - BLOR00323 Blo01g00323 54763

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00323 545 ProSiteProfiles Longin domain profile. 23 73 IPR010908 -
Blo01g00323 545 Gene3D - 392 545 IPR016039 GO:0016746
Blo01g00323 545 CDD CHS_like 172 540 - -
Blo01g00323 545 SUPERFAMILY SNARE-like 23 80 IPR011012 -
Blo01g00323 545 SUPERFAMILY Thiolase-like 157 389 IPR016039 GO:0016746
Blo01g00323 545 Gene3D - 148 391 IPR016039 GO:0016746
Blo01g00323 545 Pfam Chalcone and stilbene synthases, N-terminal domain 161 384 IPR001099 -
Blo01g00323 545 CDD Longin 23 80 IPR010908 -
Blo01g00323 545 PANTHER CHALCONE SYNTHASE 2 158 543 - -
Blo01g00323 545 Gene3D Longin domain 19 103 - -
Blo01g00323 545 ProSitePatterns Chalcone and stilbene synthases active site. 312 328 IPR018088 GO:0009058|GO:0016746
Blo01g00323 545 SUPERFAMILY Thiolase-like 391 541 IPR016039 GO:0016746
Blo01g00323 545 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 158 543 IPR011141 GO:0009058|GO:0016747
Blo01g00323 545 Pfam Chalcone and stilbene synthases, C-terminal domain 394 542 IPR012328 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00323 K00660 CHS; chalcone synthase [EC:2.3.1.74] - jre:108988452 643.269
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g00323 Blo12g00122 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00323 Blo-Chr1:3934373 Blo12g00124 Blo-Chr12:8666325 0 dispersed
Blo01g00322 Blo-Chr1:3928283 Blo01g00323 Blo-Chr1:3934373 0 tandem
Blo16g00135 Blo-Chr16:3083668 Blo01g00323 Blo-Chr1:3934373 0 transposed
Blo01g00323 Blo-Chr1:3934373 Blo12g00122 Blo-Chr12:8558691 6.05E-41 wgd
Blo01g00323 Blo-Chr1:3934373 Blo07g01070 Blo-Chr7:30531785 2.42E-38 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g885 Blo01g00323 Blo12g00122 Bda03g01119 . Bpe04g01132 . Bma04g01047 . Cmo08g01003 . Cma06g01258 Cma14g01883 Car06g01081 Car14g01685 . Cpe08g00387 Cpe03g01579 . . . . . . . . . . . . . . . . Cone7ag0378 . Lsi05g01822 . Chy05g00546 Cme06g00398 . . . . . . . . . Cmo06g01268 Cmo14g01930 Cma08g01033 Cma17g00111 . . Cpe12g00098 Cpe17g00246 Bhi12g01510 . . . . . Lcy13g0451 Cla05g00363 Cam05g0395 Cec05g0400 Cco05g0400 Clacu05g0390 Cmu05g0375 Cre05g0438 Lsi09g01156 Csa03g01116 Chy06g00384 Cme05g00694
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000620 7 3 7 12 3 2 1 2 2 1 1 2 3 2 1 2 2 4 3 2 1 3 2 2 2 6 2 4 3 16 103
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00323 Blo_Chr01 FPKM 0.257431 0.438108 2.224071 2.318793 1.155074 1.432728 1.401035 0.622085 0.761386 0.4673