Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00329 ATGGAATCAACTTCAAGCGTAAGCAAAAGTGCGTTGGCAGTGAAAGAATCATCGTCAAACTATCATCCATACCCTCCGCCTCTCGCAAAATACGAGGATCTCATAGCCAGTCCTCAGCTTTTCATTTCTAGTCTGGAGAAACTCCATGCTTCTCTCGGAACCAAGTTCATGATCCCCATTATAGGGGGGAAGGAATTAGACTTGCATAGGCTTTTTGTGGAAGTTACATCTCGGGGCGGCATTGAGAAGATCATCAGAGAGAGAAGATGGAAGGAAGTCACAGCCGTTTTCAACTTTCCCTCAACTGCTACCAACGCTTCGTTTGTGTTGAGGAAGTATTACGTTTCGCTGCTTCACCACTTCGAACAGATTTACTTCTTCAAAGCTCAAGCCTATTCCCATAACTTTGCTGATTCATTGCAGAGTCCTCAGGGCGCGCCGTTTTTACATCCGCCCCCCGATAATCAAGAAGCCATGATTCATCAATCGAAATCTGATCCTTCTGCGCCTCCTTCTGACGGGCCAAATGTTGGATCGTGGAGTGAAAATTCGGTCGTCGGAGTTATAGACGGGAAATTCGAAAGTGGGTATCTTGTGACAGTTACAATAGGTTCGGAGACGTTAAAAGGGGTTCTTTACCAAACATCGTCAAACCAGTCGGAACCAGTTTCACTCAGCATGTTTTCCGGCGGTAAAGACATTACTCCGGCATTGCCAGTCGTCCAACGCCGCAGGCGCCGGAGAAAGAAGTCGGAAATCAGAAGGCGGGATCCTGCTCATCCGAAGCCGAACAGAAGCGGCTACAACTTTTTCTTCGCCGAGCAGCATGCTAGGCTCAAACCACTCTACCCTGGGAGAGATAGAGAGATCAGCAGAATGATTGGCGAACTATGGAACAAACTGAACGAATCCGAAAGAACAGTTTATCAGGATAAAGCGATGAAAGATAAAGAAAGATACAGAGCTGAAATGGAGGAATACAGAGAGAGGCTAAGAACAGGTCAAGTAATAAGAGATGCAGTACCATTACAACAGCGTCTTCCTCAGCCTGTGAACATGGAAGTAGAAGCTGACGAGAAGATCGAGGAGGCCGTGGACTCACCTGAAACGCCATATAACGAGAGTAGCTCGAGTAAATGCGAATCCGAAGATCACCAAATGGCCGAAGATTCAGACGAAAATACATCTCGAAGAAACATTAATGTCGAGATTGCTGTTGAAGATCCAGGTTTTGAGGTGGGAAAGACAGAAGAAAGAGAAGTAGAGGAGTTGTGCAGTCCAATGAAGATGAGAGATGATTAG 1302 46.24 MESTSSVSKSALAVKESSSNYHPYPPPLAKYEDLIASPQLFISSLEKLHASLGTKFMIPIIGGKELDLHRLFVEVTSRGGIEKIIRERRWKEVTAVFNFPSTATNASFVLRKYYVSLLHHFEQIYFFKAQAYSHNFADSLQSPQGAPFLHPPPDNQEAMIHQSKSDPSAPPSDGPNVGSWSENSVVGVIDGKFESGYLVTVTIGSETLKGVLYQTSSNQSEPVSLSMFSGGKDITPALPVVQRRRRRRKKSEIRRRDPAHPKPNRSGYNFFFAEQHARLKPLYPGRDREISRMIGELWNKLNESERTVYQDKAMKDKERYRAEMEEYRERLRTGQVIRDAVPLQQRLPQPVNMEVEADEKIEEAVDSPETPYNESSSSKCESEDHQMAEDSDENTSRRNINVEIAVEDPGFEVGKTEEREVEELCSPMKMRDD 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3990205 3991899 + BLOR00329 Blo01g00329 54769

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00329 433 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 261 328 IPR009071 -
Blo01g00329 433 Gene3D - 28 140 IPR036431 GO:0003677
Blo01g00329 433 SMART bright_3 36 127 IPR001606 GO:0003677
Blo01g00329 433 MobiDBLite consensus disorder prediction 242 268 - -
Blo01g00329 433 MobiDBLite consensus disorder prediction 143 181 - -
Blo01g00329 433 MobiDBLite consensus disorder prediction 378 397 - -
Blo01g00329 433 Gene3D High mobility group box domain 245 340 IPR036910 -
Blo01g00329 433 Pfam ARID/BRIGHT DNA binding domain 40 122 IPR001606 GO:0003677
Blo01g00329 433 Coils Coil 310 330 - -
Blo01g00329 433 MobiDBLite consensus disorder prediction 158 181 - -
Blo01g00329 433 SUPERFAMILY HMG-box 254 333 IPR036910 -
Blo01g00329 433 MobiDBLite consensus disorder prediction 360 433 - -
Blo01g00329 433 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 3 396 - -
Blo01g00329 433 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677
Blo01g00329 433 SUPERFAMILY ARID-like 34 130 IPR036431 GO:0003677
Blo01g00329 433 CDD HMGB-UBF_HMG-box 261 325 - -
Blo01g00329 433 SMART ARID_2 32 122 - -
Blo01g00329 433 MobiDBLite consensus disorder prediction 410 433 - -
Blo01g00329 433 Pfam HMG (high mobility group) box 261 328 IPR009071 -
Blo01g00329 433 SMART hmgende2 260 329 IPR009071 -
Blo01g00329 433 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
Blo01g00329 433 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 3 396 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00329 - - - vvi:100260501 478.018
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00329 Blo-Chr1:3990205 Blo01g01615 Blo-Chr1:56045650 1.96E-63 dispersed
Blo01g00329 Blo-Chr1:3990205 Blo10g00890 Blo-Chr10:27877630 3.29E-85 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g902 Blo01g00329 . . Bda08g00034 Bpe04g01069 . Bma04g01053 Bma05g01290 Cmo08g00997 . . . . . . . . . . . . . . . Cla06g00753 Cam06g0805 Cec06g0816 . Clacu06g0808 Cmu06g0781 Cre06g1559 . . Cone7ag0393 . . . Chy05g00556 . . . . . Bpe05g01140 . . . Sed09g0187 . . Cma08g01025 . Car08g00902 . . Cpe17g00251 Bhi12g01502 Tan06g2304 Cmetu04g1927 Lac12g2048 Hepe03g0356 . Lcy13g0460 . . . . . . . Lsi09g01146 . . Cme05g00713
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo01g00329 . 27 364 ARID Transcription Factor Family AT1G04880 59.5 2.6e-100 362.8
Blo01g01615 . 871 1140 ARID Transcription Factor Family AT1G76110 61.0 1.6e-86 316.6
Blo10g00890 BCT 42 310 ARID Transcription Factor Family AT3G13350 52.3 2.9e-74 275.8
Blo07g00805 CCT,ECH 1 780 ARID Transcription Factor Family AT3G43240 54.8 8.9e-239 823.5
Blo06g00765 CCT,ECH 2 740 ARID Transcription Factor Family AT3G43240 55.8 1.2e-235 813.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004427 1 1 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 6 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11832 PF01388 ARID 1.20E-17 CL0123 Blo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00329 Blo_Chr01 FPKM 7.788723 7.875762 6.469485 5.530861 13.994637 13.092753 15.663463 6.361468 7.334242 7.127694