Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00329 ATGGAATCAACTTCAAGCGTAAGCAAAAGTGCGTTGGCAGTGAAAGAATCATCGTCAAACTATCATCCATACCCTCCGCCTCTCGCAAAATACGAGGATCTCATAGCCAGTCCTCAGCTTTTCATTTCTAGTCTGGAGAAACTCCATGCTTCTCTCGGAACCAAGTTCATGATCCCCATTATAGGGGGGAAGGAATTAGACTTGCATAGGCTTTTTGTGGAAGTTACATCTCGGGGCGGCATTGAGAAGATCATCAGAGAGAGAAGATGGAAGGAAGTCACAGCCGTTTTCAACTTTCCCTCAACTGCTACCAACGCTTCGTTTGTGTTGAGGAAGTATTACGTTTCGCTGCTTCACCACTTCGAACAGATTTACTTCTTCAAAGCTCAAGCCTATTCCCATAACTTTGCTGATTCATTGCAGAGTCCTCAGGGCGCGCCGTTTTTACATCCGCCCCCCGATAATCAAGAAGCCATGATTCATCAATCGAAATCTGATCCTTCTGCGCCTCCTTCTGACGGGCCAAATGTTGGATCGTGGAGTGAAAATTCGGTCGTCGGAGTTATAGACGGGAAATTCGAAAGTGGGTATCTTGTGACAGTTACAATAGGTTCGGAGACGTTAAAAGGGGTTCTTTACCAAACATCGTCAAACCAGTCGGAACCAGTTTCACTCAGCATGTTTTCCGGCGGTAAAGACATTACTCCGGCATTGCCAGTCGTCCAACGCCGCAGGCGCCGGAGAAAGAAGTCGGAAATCAGAAGGCGGGATCCTGCTCATCCGAAGCCGAACAGAAGCGGCTACAACTTTTTCTTCGCCGAGCAGCATGCTAGGCTCAAACCACTCTACCCTGGGAGAGATAGAGAGATCAGCAGAATGATTGGCGAACTATGGAACAAACTGAACGAATCCGAAAGAACAGTTTATCAGGATAAAGCGATGAAAGATAAAGAAAGATACAGAGCTGAAATGGAGGAATACAGAGAGAGGCTAAGAACAGGTCAAGTAATAAGAGATGCAGTACCATTACAACAGCGTCTTCCTCAGCCTGTGAACATGGAAGTAGAAGCTGACGAGAAGATCGAGGAGGCCGTGGACTCACCTGAAACGCCATATAACGAGAGTAGCTCGAGTAAATGCGAATCCGAAGATCACCAAATGGCCGAAGATTCAGACGAAAATACATCTCGAAGAAACATTAATGTCGAGATTGCTGTTGAAGATCCAGGTTTTGAGGTGGGAAAGACAGAAGAAAGAGAAGTAGAGGAGTTGTGCAGTCCAATGAAGATGAGAGATGATTAG 1302 46.24 MESTSSVSKSALAVKESSSNYHPYPPPLAKYEDLIASPQLFISSLEKLHASLGTKFMIPIIGGKELDLHRLFVEVTSRGGIEKIIRERRWKEVTAVFNFPSTATNASFVLRKYYVSLLHHFEQIYFFKAQAYSHNFADSLQSPQGAPFLHPPPDNQEAMIHQSKSDPSAPPSDGPNVGSWSENSVVGVIDGKFESGYLVTVTIGSETLKGVLYQTSSNQSEPVSLSMFSGGKDITPALPVVQRRRRRRKKSEIRRRDPAHPKPNRSGYNFFFAEQHARLKPLYPGRDREISRMIGELWNKLNESERTVYQDKAMKDKERYRAEMEEYRERLRTGQVIRDAVPLQQRLPQPVNMEVEADEKIEEAVDSPETPYNESSSSKCESEDHQMAEDSDENTSRRNINVEIAVEDPGFEVGKTEEREVEELCSPMKMRDD 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3990205 3991899 + BLOR00329 Blo01g00329 54769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00329 433 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 261 328 IPR009071 -
Blo01g00329 433 Gene3D - 28 140 IPR036431 GO:0003677
Blo01g00329 433 SMART bright_3 36 127 IPR001606 GO:0003677
Blo01g00329 433 MobiDBLite consensus disorder prediction 242 268 - -
Blo01g00329 433 MobiDBLite consensus disorder prediction 143 181 - -
Blo01g00329 433 MobiDBLite consensus disorder prediction 378 397 - -
Blo01g00329 433 Gene3D High mobility group box domain 245 340 IPR036910 -
Blo01g00329 433 Pfam ARID/BRIGHT DNA binding domain 40 122 IPR001606 GO:0003677
Blo01g00329 433 Coils Coil 310 330 - -
Blo01g00329 433 MobiDBLite consensus disorder prediction 158 181 - -
Blo01g00329 433 SUPERFAMILY HMG-box 254 333 IPR036910 -
Blo01g00329 433 MobiDBLite consensus disorder prediction 360 433 - -
Blo01g00329 433 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 3 396 - -
Blo01g00329 433 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677
Blo01g00329 433 SUPERFAMILY ARID-like 34 130 IPR036431 GO:0003677
Blo01g00329 433 CDD HMGB-UBF_HMG-box 261 325 - -
Blo01g00329 433 SMART ARID_2 32 122 - -
Blo01g00329 433 MobiDBLite consensus disorder prediction 410 433 - -
Blo01g00329 433 Pfam HMG (high mobility group) box 261 328 IPR009071 -
Blo01g00329 433 SMART hmgende2 260 329 IPR009071 -
Blo01g00329 433 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
Blo01g00329 433 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 3 396 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00329 Blo-Chr1:3990205 Blo01g01615 Blo-Chr1:56045650 1.96E-63 dispersed
Blo01g00329 Blo-Chr1:3990205 Blo10g00890 Blo-Chr10:27877630 3.29E-85 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11832 PF01388 ARID 1.20E-17 CL0123 Blo TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00329 - - vvi:100260501 478.018