Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00369 ATGGCAAACCTACCTATCCTTCAATTTGAAGAGAGGATAACTGAAACAGTGGATCAGAATCCAGTCGTCGTTATAATTGGAGAGACAGGTTCCGGGAAGAGCACTCAACTCTCGCAGATACTTCACAGAAGAGGATATACAAAGTCAGGAACTGTCGGGGTCACTCAGCCTCGTCGAGTGGCCGCTGTCTCTGTTGCCAGACGAGTTGCAAAGGAGCTAGGTGTTCCCCTTGGCGACGAAGTAGGATATGCTATACGATTTGAAGACAGAACTTCAGAAAGAACAAGGATCAAATACCTCACTGATGGTGTGCTCCTTCGAGAAAGTCTTACTGACCCAGATCTTAATCAATATTCAGTGATCATATTAGACGAAGCTCATGAGAGGAGCCTGAACACAGATATATTGCTTGGACTCATGAAACGACTGGTTAGACGCCGTACATCCAATTTAAAGGTTCTAATCACTTCAGCAACCCTTGATGGAGATAAAGTATCAAAATTTTTTTCAGATTGCCCTGTTCTGACAATTCCAGGGAAGTTATTTCCCGTTGAAATTTTTTACAGCGACGAGCTTCCTAAAAGCTATATTGAGTCATCTTTAAAAGCAGCTCTTGATATACACGTACGAGAACCAGAGGGGGATGTTCTAATTTTCATGACTGGACAGGACGATATAGATAAATTAGTGTCAAAATTGGAAGATAGAGTTAGTAACCTTGAAGAAGGATCCTGCATGGATGCCATAGTACTTCCTCTTCATGGTTCTTTGCCACCTGAAATGCAGGTTCGTGTATTTAGTCCTCCACCCCAAAATTGTCGCCGGATTATTGTTGCCACAAACATAGCTGAAACTTCTTTGACTGTTGATGGTGTTGTGTATGTTATTGATGCCGGTTATGTCAAGCAGCGGCAATATAATCCTTCGACTGGCATGAACTCCCTTGATGTTGTGCAAATTAGCAAAGTGCAAGCAACGCAGCGGGCGGGACGAGCAGGAAGAACATGTAGCGGGAAATGCTACCGTTTATACCCAAAGATAGTTTATGATGATAAATTCCTGGATGTAACAGTCCCTGAAATACAAAGAACATCTCTTGCTGGCAGTGTTCTTCATTTGAAATCATTGGACCTTTCCGATATTGATATTCTACAATTTGACTTTCTCGATCAACCTACCTCTGAGTCTTTAGAAGATGCATTGAAACAACTATACCTCATTGATGCTATTGATGAAAATGGATCAATCACAAGAATTGGACGAACTATGGCTGAGCTTCCTCTAGAACCGGCACTCTCAAGAACCCTTATAGAGGCAAATGAGTATGGTTGTATATCACAGGCGTTGTCTGTTGCTGCTATGCTATCAGCTGAAACCACATTGCTTCCTGGTCGCAGCAAGAGTACTGAAAAGAAAAGAAAGCACATTTCGGCGGACCTCCCGGATGGTTTTGGATGGGGTGATCACATCCAGGTGCTGCAGATCTATGAGCACTGGGATCGTAGAAACTTCGACATTGACTGGTGTAAAGACAATGGCTTGCAGGTGCGAGGAATGATGTTTGTCAAAGATGTCCGGAAACAACTGTCTCAGATAATGCAGAAGATAGCAAAGGATGCCAACAGACGAGTAAAAGATAGGCAGGAGGATTATCAGAGTTTGAGGAAGGCTTTATGTGTAGGCTATGCTAATCAACTTGCTGAGAGAATGATGTACCACAATGGTTATCGTACTCTAAATTTTAAACCCCAAGTAGTGCAGGTTCATCCATCTTCTGTTCTCAAACCAGATGAAGACGGAAAGCTAGCTGACTATGTTGTCTACCATGAGCTAATAACGACATCACGCCCATACATGCGCAATGTATGTGCTGTAGACATGAGATGGGTCATGCCTATTTTGAACAAGGTTAAAAATCTGAATGTTAGGAAACTGAGTGGTGGCTCTGGTTCATCGAAGGAGACGATAGAAGGAAAAGATTCGGATTTTCCAAAGATAGAGGTTGATGCTACCAAAGCGCCTGATGATCGGGAGAGTAGAGTTCAGGCGGCAAGAGAAAGATATTTAGCTCGGAAAGAGAAGAAGTGA 2088 42.86 MANLPILQFEERITETVDQNPVVVIIGETGSGKSTQLSQILHRRGYTKSGTVGVTQPRRVAAVSVARRVAKELGVPLGDEVGYAIRFEDRTSERTRIKYLTDGVLLRESLTDPDLNQYSVIILDEAHERSLNTDILLGLMKRLVRRRTSNLKVLITSATLDGDKVSKFFSDCPVLTIPGKLFPVEIFYSDELPKSYIESSLKAALDIHVREPEGDVLIFMTGQDDIDKLVSKLEDRVSNLEEGSCMDAIVLPLHGSLPPEMQVRVFSPPPQNCRRIIVATNIAETSLTVDGVVYVIDAGYVKQRQYNPSTGMNSLDVVQISKVQATQRAGRAGRTCSGKCYRLYPKIVYDDKFLDVTVPEIQRTSLAGSVLHLKSLDLSDIDILQFDFLDQPTSESLEDALKQLYLIDAIDENGSITRIGRTMAELPLEPALSRTLIEANEYGCISQALSVAAMLSAETTLLPGRSKSTEKKRKHISADLPDGFGWGDHIQVLQIYEHWDRRNFDIDWCKDNGLQVRGMMFVKDVRKQLSQIMQKIAKDANRRVKDRQEDYQSLRKALCVGYANQLAERMMYHNGYRTLNFKPQVVQVHPSSVLKPDEDGKLADYVVYHELITTSRPYMRNVCAVDMRWVMPILNKVKNLNVRKLSGGSGSSKETIEGKDSDFPKIEVDATKAPDDRESRVQAARERYLARKEKK 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4301240 4309081 + BLOR00369 Blo01g00369 54809

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00369 695 Pfam Helicase conserved C-terminal domain 208 335 IPR001650 -
Blo01g00369 695 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 14 178 IPR014001 -
Blo01g00369 695 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 537 IPR027417 -
Blo01g00369 695 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 554 635 IPR011709 -
Blo01g00369 695 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 119 128 IPR002464 -
Blo01g00369 695 Gene3D - 1 180 IPR027417 -
Blo01g00369 695 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 200 377 IPR001650 -
Blo01g00369 695 SMART helicmild6 227 336 IPR001650 -
Blo01g00369 695 PANTHER ATP-DEPENDENT RNA HELICASE 3 633 - -
Blo01g00369 695 MobiDBLite consensus disorder prediction 646 695 - -
Blo01g00369 695 Coils Coil 537 557 - -
Blo01g00369 695 Gene3D - 181 356 IPR027417 -
Blo01g00369 695 CDD SF2_C_RHA 182 344 - -
Blo01g00369 695 Pfam AAA domain 21 145 IPR003593 -
Blo01g00369 695 MobiDBLite consensus disorder prediction 655 695 - -
Blo01g00369 695 Gene3D - 383 540 - -
Blo01g00369 695 SMART ultradead3 2 187 IPR014001 -
Blo01g00369 695 SMART ha2_5 399 493 IPR007502 GO:0004386
Blo01g00369 695 Pfam Helicase associated domain (HA2) 400 524 IPR007502 GO:0004386
Blo01g00369 695 SMART AAA_5 19 299 IPR003593 -
Blo01g00369 695 PANTHER OS06G0343100 PROTEIN 3 633 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00369 K12818 DHX8, PRP22; ATP-dependent RNA helicase DHX8/PRP22 [EC:3.6.4.13] - qsu:112022268 1122.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00369 Blo-Chr1:4301240 Blo10g00334 Blo-Chr10:5031762 0 dispersed
Blo13g00669 Blo-Chr13:29416524 Blo01g00369 Blo-Chr1:4301240 2.25E-81 dispersed
Blo01g00363 Blo-Chr1:4266593 Blo01g00369 Blo-Chr1:4301240 1.16E-172 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1173 Blo01g00369 . Bda01g02187 . Bpe13g00524 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g00021 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007202 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 5 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00369 Blo_Chr01 FPKM 13.306779 15.252751 44.846764 47.091549 3.971952 3.588702 4.836311 101.555336 104.745537 108.656937