Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00373 ATGAGCAATGCTTGCATTACCAGAGTTTGTGGTAATCAGCATAGAGCAATTGGGAAAGTGTGTCCCAGAAAAACAATACAAATTACAGTCTCGAGAAGCTTTTCAACTTCGACTTCACCCCTCATCAATGTTGTTTCCCCTCTTGTCATCCGGGCACCGCCGTCATTGGTGTTGGCCGCCCGTCTTACCCCATCTGATGCTCCACAGCGTTCTGAGGAATGGTTTGCCCTTCGCCGGGACAAGCTAACTACAAGCACTTTCAGCACAGCCTTGGGGTTTTGGAAAGGAAATCGTCGCGCTGAGCTATGGCATGAGAAGGTATTTTCTTTAGAGACCCAAAGCATAGAAGCTTCTAAAAGGTGTGCCATGGAGTGGGGTGTGCTGAACGAAGAGGCTGCTATTGATCGGTACAAAAGCATTACTGGCAGGGATGTGAGCATTTTAGGGTTCGCCACCCATCCGGAGCAGCGATTCCAGTGGCTTGGGGCCTCACCTGATGGCATTCTTGGTTGCTTTCCGGGAGGTGGGATTTTGGAAGTCAAATGTCCTTACAACAAAGGAAAGCCAGAGATGGGTCTGCCCTGGTCGACAATGCCCTTCTATTACATGCCCCAAGTGCAGGGTCAGATGGAAATAATGAATCTAGATTGGGTGGATTTATATTGTTGGACGCCAAATGGAAGCACAATATTTCGGGTGTGTCGGGCACGTGCTTATTGGGAGCTAATACGTGGGATTTTAAGAGAATTTTGGTGGGAAAATGTGGTTCCCGCTAGGGAGGCTCTATTGCTGGGGAAAGAGGAGGAGGAGGTGGCATTGTGCAAGCCAACATCAACGCACAAACTTACAGGACTAGCCATAGCTAAAAGCATTCAATTGGCGAGTGAAGCAAAGTTGGTGTGTAGGGAAGTTGCAGGGTATATTGAATTTTACAAGTAA 939 48.03 MSNACITRVCGNQHRAIGKVCPRKTIQITVSRSFSTSTSPLINVVSPLVIRAPPSLVLAARLTPSDAPQRSEEWFALRRDKLTTSTFSTALGFWKGNRRAELWHEKVFSLETQSIEASKRCAMEWGVLNEEAAIDRYKSITGRDVSILGFATHPEQRFQWLGASPDGILGCFPGGGILEVKCPYNKGKPEMGLPWSTMPFYYMPQVQGQMEIMNLDWVDLYCWTPNGSTIFRVCRARAYWELIRGILREFWWENVVPAREALLLGKEEEEVALCKPTSTHKLTGLAIAKSIQLASEAKLVCREVAGYIEFYK 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4329163 4330101 + BLOR00373 Blo01g00373 54813

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00373 312 TIGRFAM phage_rel_nuc: putative phage-type endonuclease 68 224 IPR017482 -
Blo01g00373 312 Pfam YqaJ-like viral recombinase domain 73 212 IPR019080 -
Blo01g00373 312 PANTHER RESTRICTION ENDONUCLEASE, TYPE II-LIKE SUPERFAMILY PROTEIN 2 311 - -
Blo01g00373 312 PANTHER EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN 2 311 - -
Blo01g00373 312 Gene3D - 68 271 IPR011604 -
Blo01g00373 312 SUPERFAMILY Restriction endonuclease-like 65 269 IPR011335 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00373 - - - pvy:116128508 480.715
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00373 Blo-Chr1:4329163 Blo18g00146 Blo-Chr18:1344961 1.49E-45 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1138 Blo01g00373 . Bda01g02192 . Bpe13g00520 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0722 . . . . . . . . . . . Bma01g00024 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010567 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00373 Blo_Chr01 FPKM 948.141296 993.21228 109.60936 104.148331 287.24353 309.898834 271.407715 13.911945 13.551912 12.536639