Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00382 ATGAGCAGTAGTAGCACACTGGTTTCTGTTTCGGTCCCGCATTGTCATACTTCTTCGAGCCCTAAGACACCCGACCAAGCTTCTTCTTCTTGTATGTTGAAGAGGAAAAGACCACCCGTGATTGAGATCCCCAACATTTTGCGAGAAATTCGAGCGGATGATATCGTACCCACTAGCAATGGCCTTTCCTTTTCTATGAATGGAGTTGGGGTCGAGTCTGTCAAAGGCAAGAAAAAGTTCATGGAAGATGCGCACAAAATTGTTCCTTTCTCAAAGGGACACTTGAATAAGGCTTTTTTTGGGGTTTATGATGGGCATGGAGGCAGCAAGGCCGCCGAGTTTGTTGCTCAAAATTTGCACCGTAACATCCTAGAAATGATGGATCATAGTACGGGATCTACGGAGAGAGAAGAGAGGATCAAATCTGGTTATTTGAAGACAGACCTCGACTTCTTGAATTTGGGTATTGGGAGTGGTGCGTGCTGCGTTACTGCTTTGATTCAAGGACAAGAGGTTATTATTTCAAATTTAGGAGACTGCAGAGCTGTTCTATCTAGAGGTGGAGTAGCTGAAGCAGTCACAAAAGACCATAGAGCGGAACGAGAGGAGGAAAGGCAGAGAATAGAGAGTGAGGTAATCCAGGGTGGATATGTGGAGTTTCATAGGGGAGCATGGAGAGTTCATGGGGTGCTTTCTGTTTCAAGGAGCATTGGAGATGCCCATTTGAAGAACTGGGTTGTAGCTGAGCCTGAGACAAAAACCTTGTCTTTCACTCCAGATATGGAGTTTCTTGTCTTAGCTTCTGATGGATTGTGGGAAGAGAAACATTATCTGTTTTTGAAATTGCTTTTTAGCTGTTTCAGTTTTGAAGAATGCATTAAAAAGGGACTTTTGTTTCTGCAAATTTTTAAAGTAGATTGGGTTGGCAACCAAGAGGCCATTGACATTGTCAGCCGAGTCTGCTTGCGTGATAAGCAATCAGCACAAGCAGAAGGTCCCCACAAATGCCCGCCCGTCGATCCAAATCATGGCTACGTTAATGCAAGTCCGTCGTCCAAGCTACGCAGAGTCGAGAAACAAGGAAGGAACCGCTCTTCACCATACAAAAAGACAACGACTTGTGACAGAGATGGCGAAGAGGATGATGACTTCAGCCGTGAAAACCAGAGTCCTGCTTCAAAGTCAAGAAGAATATCATTGATGAAGCGGGTGAACGTAAAGACCGAGTCTGCATCTAAGGAGAACAGGTCCCCCTCAAATGGCCTCGTGGCAGCTTGTAAGGAGCTTGTGGGCCTCGCTCTTTCCAGGGGCAGTCTGGATGATATCACTGTTATGATAATTGATTTGAATCATTTTAGATCCAAAACCTGA 1371 45.08 MSSSSTLVSVSVPHCHTSSSPKTPDQASSSCMLKRKRPPVIEIPNILREIRADDIVPTSNGLSFSMNGVGVESVKGKKKFMEDAHKIVPFSKGHLNKAFFGVYDGHGGSKAAEFVAQNLHRNILEMMDHSTGSTEREERIKSGYLKTDLDFLNLGIGSGACCVTALIQGQEVIISNLGDCRAVLSRGGVAEAVTKDHRAEREEERQRIESEVIQGGYVEFHRGAWRVHGVLSVSRSIGDAHLKNWVVAEPETKTLSFTPDMEFLVLASDGLWEEKHYLFLKLLFSCFSFEECIKKGLLFLQIFKVDWVGNQEAIDIVSRVCLRDKQSAQAEGPHKCPPVDPNHGYVNASPSSKLRRVEKQGRNRSSPYKKTTTCDRDGEEDDDFSRENQSPASKSRRISLMKRVNVKTESASKENRSPSNGLVAACKELVGLALSRGSLDDITVMIIDLNHFRSKT 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4371285 4373281 - BLOR00382 Blo01g00382 54822

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00382 456 SMART PP2C_4 53 447 IPR001932 -
Blo01g00382 456 MobiDBLite consensus disorder prediction 1 30 - -
Blo01g00382 456 ProSitePatterns PPM-type phosphatase domain signature. 99 107 IPR000222 GO:0043169
Blo01g00382 456 SUPERFAMILY PP2C-like 64 451 IPR036457 -
Blo01g00382 456 Pfam Protein phosphatase 2C 68 273 IPR001932 -
Blo01g00382 456 MobiDBLite consensus disorder prediction 1 33 - -
Blo01g00382 456 CDD PP2Cc 67 273 IPR001932 -
Blo01g00382 456 Gene3D - 304 456 IPR036457 -
Blo01g00382 456 MobiDBLite consensus disorder prediction 330 419 - -
Blo01g00382 456 ProSiteProfiles PPM-type phosphatase domain profile. 68 449 IPR001932 -
Blo01g00382 456 PANTHER PROTEIN PHOSPHATASE 2C 14-RELATED 19 274 - -
Blo01g00382 456 PANTHER PROTEIN PHOSPHATASE 2C 14-RELATED 306 453 - -
Blo01g00382 456 PANTHER PROTEIN PHOSPHATASE 2C 19 274 IPR015655 GO:0004722|GO:0006470
Blo01g00382 456 PANTHER PROTEIN PHOSPHATASE 2C 306 453 IPR015655 GO:0004722|GO:0006470
Blo01g00382 456 MobiDBLite consensus disorder prediction 355 390 - -
Blo01g00382 456 Gene3D - 62 279 IPR036457 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00382 - - K17506 jre:108991840 461.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00382 Blo-Chr1:4371285 Blo03g01176 Blo-Chr3:38069176 2.02E-61 dispersed
Blo01g00382 Blo-Chr1:4371285 Blo04g00226 Blo-Chr4:1763274 1.98E-65 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g634 Blo01g00382 . Bda01g02205 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0679 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001841 6 1 3 2 4 2 2 2 2 2 1 2 2 1 2 3 2 5 2 2 2 2 2 2 1 2 1 2 3 3 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00382 Blo_Chr01 FPKM 0.057333 0.196606 0.0 0.0 3.154771 1.496958 2.42022 0.0 0.0 0.127518