Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00385 ATGATCACCCTCCCTAGGGTTCTTCTGAGCTCTCCAGGGAGCGGGCTGCAAATGCCCATAATTGGAATGGGCACCGCTGCTGACTCATTTGACGCCAATGCGTTAAAGTGCTCAGTGATTGAAGCCATTAAACTGGGGTATCGTCACTTTGATACAGCTTCCTCGTATGGGTCAGAGGAGCCTCTGGGAGAAGCCATATCCAAAGCTCTGAAGCTCGGCCTCGTCAGTTCTAGGAAGGAACTCTTCATTACATCAAAGCTCTGGCCTGGCGATGCCCACCATGACTACGTCCTCCCTGCGTTGCAGGAATCTCTTAGAGCTCTGAGGCTTAACTACATGGATCTGTATCTCATTCACTGGCCAATAACTTACAAGAGAGGAAAGAAAAAGTTCGAGGCAGTGGAGGAAGATGACCTACTACCAATGGACTTCAAGGCAGTATGGCAAGCAATGGAAGAGTGCCAGAGACTTGCGCTCACAAGCTCAATTGGGGTCTGCAATTTCTCCTCCAAGAAGCTTCAAAACTTGCTCTCCTTCGCCAAAATCCCCCCTTCAGTCAACCAAGTAAGTAGACAGGTGGAAATGAACCCGGTGTGGCAGCAGAAGAAACTCCGAAAGTTTTGCAAAGCCAATGGAGTCCTTCTCACAGCCTACTCTCCCTTGGGCGGAAAGGGTTCTTTTTGGGGTACAGATCAAGTCATGGACTGCCAAATTCTCAAGGAAATCGCGCAGGCCAGGAATAAAACAGTTGCTCAGAATAATGCAATTACTTCAATGGCGCACGCTTTTGTCGCAGCCGGCAAACTGGCTGCAGCTAAAACCTTATATCTCAAAGTTGACAAAGCAACAGTTGGAGTTACTCCAATTCCTCAATTACTCCCGGCAAGAAATTATTTTCCTACAGAGCGGGATATGAATTTCAAAGGACTGACTGTGACCATGACGATGAACATGATGAGGAAGCTCTTTGATTTTTCTTTGTGTATGTTTCAACCGATCATTCATACTTCATCAACGCACGCTCTCCATTCTTCAATTGTATTCTCGGAAGAAGAATCTCCTTTAATGGAAGAAGCATTCAGGAGCCTCAGCGGGATAGTCTTGCCACATGAGCCAGAATCTAGTACATTCTCCGATCACTCACTTAAGAGTATCATCTCTCCAAATTCCACAGCTTCCGTCTCTCTCCCTGCCAACAGTAGCAGCAGTACCAAGAGGACTTTGAGAGAGAACTCCAGCAGCTCATCAGGGGGAACAATGCGATACCGGGGAGTTCGCCGCCGGCCTTGGGGTCGTTACGCCGCCGAGATAAGAGACCCGCAGTCTAAGGAAAGGCGGTGGCTTGGTACCTTTGACACTGCCGAGGAGGCCGCTCGTGCCTACGACTGCGCCGCCCGCGCCATGCGAGGGCTCAAAGCGCGCACCAACTTCGTTTACCCTGCGCCACCTCCGGTCCCTGATCATTTTATTCCTGCCATCAACTTCGGGGACCAAACCCTCTCTTCCAACCTTAACCATCCCATTAATCGTAAGTTCGCTCCGACTTCTAATTGGCCGTTGTTCTCCAGCCACCAAGAAAATAGCTTTTCTTGGCCGGCAACTCAGAGAAATACTCCTTGCCCTACTCTTAACACCCTTCTTCTCCGCGATTACCTAAGTTTCGCTTCAAATTCTTCCATACCATCGTCTTCTCCTCGGAACTCATATGATCAGTTTACTCAACTAAACGTCTCTTCCTCGCGCTATACCTCTCTTTCTCCTACCAACGTCTCCGACAGTTTCGCCGCTGTCTCTTCCCCAGTACCTCTTCCTGTCCAAACCCATCCCATCTTCTGCAACTACAAAAATGTCGCCTGTATGGAGGAATCAGAGTTCATACCTAAAGAAAATTCAGATACCGGCTTGTTGGAAGAAATCATACATGGGTTTTTTCCCAAGGCCTCTTCTAAAAAGTGCGAATCTCTAAAAACCCATGAACACAGTGCACAATTCAACACTGTAATGCCCGAAATAAGCGCAAATGCTCAATCGTTCCATGGAGCTCAGAAGGTTCCTAGAACTGAACAACAGTTTGGGTTTGGTTTGGATTATCAAGGTATTCCACCGCAGTTGGATAAACTCAACGGCTTCAAGGCATCGCTTAATTCCTTGCCATTTGGAAATGATGTGCCGTTTGTCGATCAGGATTCTCCGTTGGATGACATTTTCCAGTACCCAGATCTTCTACCTGCATTTACTGCTAGGGTTCAAAACGCATAG 2259 47.99 MITLPRVLLSSPGSGLQMPIIGMGTAADSFDANALKCSVIEAIKLGYRHFDTASSYGSEEPLGEAISKALKLGLVSSRKELFITSKLWPGDAHHDYVLPALQESLRALRLNYMDLYLIHWPITYKRGKKKFEAVEEDDLLPMDFKAVWQAMEECQRLALTSSIGVCNFSSKKLQNLLSFAKIPPSVNQVSRQVEMNPVWQQKKLRKFCKANGVLLTAYSPLGGKGSFWGTDQVMDCQILKEIAQARNKTVAQNNAITSMAHAFVAAGKLAAAKTLYLKVDKATVGVTPIPQLLPARNYFPTERDMNFKGLTVTMTMNMMRKLFDFSLCMFQPIIHTSSTHALHSSIVFSEEESPLMEEAFRSLSGIVLPHEPESSTFSDHSLKSIISPNSTASVSLPANSSSSTKRTLRENSSSSSGGTMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAARAYDCAARAMRGLKARTNFVYPAPPPVPDHFIPAINFGDQTLSSNLNHPINRKFAPTSNWPLFSSHQENSFSWPATQRNTPCPTLNTLLLRDYLSFASNSSIPSSSPRNSYDQFTQLNVSSSRYTSLSPTNVSDSFAAVSSPVPLPVQTHPIFCNYKNVACMEESEFIPKENSDTGLLEEIIHGFFPKASSKKCESLKTHEHSAQFNTVMPEISANAQSFHGAQKVPRTEQQFGFGLDYQGIPPQLDKLNGFKASLNSLPFGNDVPFVDQDSPLDDIFQYPDLLPAFTARVQNA 752
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4386882 4396151 - BLOR00385 Blo01g00385 54825

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00385 752 SUPERFAMILY DNA-binding domain 421 478 IPR016177 GO:0003677
Blo01g00385 752 PANTHER ALDO/KETO REDUCTASE 9 254 - -
Blo01g00385 752 Gene3D - 2 275 IPR036812 -
Blo01g00385 752 CDD AP2 421 477 IPR001471 GO:0003700|GO:0006355
Blo01g00385 752 Pfam Aldo/keto reductase family 32 225 IPR023210 -
Blo01g00385 752 ProSiteProfiles AP2/ERF domain profile. 421 478 IPR001471 GO:0003700|GO:0006355
Blo01g00385 752 SUPERFAMILY NAD(P)-linked oxidoreductase 13 253 IPR036812 -
Blo01g00385 752 PANTHER ALDO/KETO REDUCTASE FAMILY OXIDOREDUCTASE 9 254 - -
Blo01g00385 752 SMART rav1_2 421 484 IPR001471 GO:0003700|GO:0006355
Blo01g00385 752 PRINTS Aldo-keto reductase signature 233 257 IPR020471 GO:0016491
Blo01g00385 752 PRINTS Aldo-keto reductase signature 189 218 IPR020471 GO:0016491
Blo01g00385 752 PRINTS Aldo-keto reductase signature 103 121 IPR020471 GO:0016491
Blo01g00385 752 PRINTS Aldo-keto reductase signature 42 66 IPR020471 GO:0016491
Blo01g00385 752 Gene3D AP2/ERF domain 420 479 IPR036955 GO:0003700|GO:0006355
Blo01g00385 752 MobiDBLite consensus disorder prediction 393 422 - -
Blo01g00385 752 ProSitePatterns Aldo/keto reductase family signature 1. 46 63 IPR018170 GO:0016491
Blo01g00385 752 Pfam AP2 domain 421 470 IPR001471 GO:0003700|GO:0006355
Blo01g00385 752 MobiDBLite consensus disorder prediction 393 420 - -
Blo01g00385 752 PRINTS Ethylene responsive element binding protein signature 444 460 IPR001471 GO:0003700|GO:0006355
Blo01g00385 752 PRINTS Ethylene responsive element binding protein signature 422 433 IPR001471 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00385 - - - mcha:111005164 347.821
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00385 Blo-Chr1:4386882 Blo13g00236 Blo-Chr13:10188624 1.72E-35 dispersed
Blo02g00217 Blo-Chr2:2048473 Blo01g00385 Blo-Chr1:4386882 8.35E-29 transposed
Blo05g00453 Blo-Chr5:6393422 Blo01g00385 Blo-Chr1:4386882 1.18E-79 transposed
Blo09g00158 Blo-Chr9:4918964 Blo01g00385 Blo-Chr1:4386882 3.94E-55 transposed
Blo09g00244 Blo-Chr9:10906006 Blo01g00385 Blo-Chr1:4386882 3.48E-50 transposed
Blo11g00952 Blo-Chr11:20977174 Blo01g00385 Blo-Chr1:4386882 5.15E-29 transposed
Blo11g00953 Blo-Chr11:20978041 Blo01g00385 Blo-Chr1:4386882 2.41E-36 transposed
Blo16g00695 Blo-Chr16:26724523 Blo01g00385 Blo-Chr1:4386882 2.19E-28 transposed
Blo01g00385 Blo-Chr1:4386882 Blo16g01172 Blo-Chr16:40274586 1.07E-173 wgd
Blo01g00385 Blo-Chr1:4386882 Blo06g00850 Blo-Chr6:31743521 1.57E-43 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1075 Blo01g00385 . . . . . . . . . . . . . . . . Bhi07g00153 . . . Hepe01g0358 . . . . . . . . . . . . . . . Chy10g00095 Cme10g01125 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01008 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001840 3 2 3 2 2 2 4 2 2 2 2 2 4 2 2 2 2 2 4 2 2 2 2 2 1 2 2 2 2 1 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11835 PF00248 Aldo_ket_red 5.70E-33 No_clan Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00385 Blo_Chr01 FPKM 0.0 0.0 0.0 0.0 0.341972 0.0 0.197177 0.0 0.245686 0.235895