Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00394 ATGCAAGCATGGAGAGAAAATCCTTCGTGGGAAGACAAACCTCCAGAAATAAAGGTCAGCGTTCCAAAAGGTACTCTTGGCAACATCAAAGTGAAGGTCAATGTTGGTTTGCCGCCAGATGCAGTGTTTAACATAGTGACGGACCCTGATAATAAAAGGGTTTTCAAGAATATTAAAGAAGTGATATCGAGGAGCGTTTTGGTCGACGAAGGCCTGAGACAGGTGGTTGAGGTGGAGCAAGCAGCTCTATGGCGATTTCTTTGGTGGTCTGGGATAATCTCAGTTCATGTTCTCGTAGATCAAAACAGGGCAGATTACTCGATGAAGTTCAAGCAAATCAAGACGGGATTTATGAAGAGATTTGAAGGGAGCTGGAAAGTGGAACCTCTGTTTGTCGACGAAAGCAACTGCTCGCCCTTCAAACCAGAGAATTTGGCAGATTACGAAGCTTGTACGAGAGGCAAAGGAAGGGTTGGTTCAAAGCTAAGCTTAGAACAGCTGGTTCAGCCTGCAATTGTTCCTCCCCCACCCATTTCTTGGTATCTTAGAGGAATTACCGCCAGGACCACTGAAATGCTTATAAATGATTTGCTTGCTGAATCGGCCCGGCTAAGGGAGTCCCTTGATGCCGAAAGATCTAACGAAGTTTCTCATGATCTGATCGAAAAACGGCCTATTGATCATGTGAGGGACATAAAAGAAAGATGGAGAGACCGCCGGAGAAACGCGCATCCATTCCACCGGAGGCCATCGACGTCTATATGA 765 46.01 MQAWRENPSWEDKPPEIKVSVPKGTLGNIKVKVNVGLPPDAVFNIVTDPDNKRVFKNIKEVISRSVLVDEGLRQVVEVEQAALWRFLWWSGIISVHVLVDQNRADYSMKFKQIKTGFMKRFEGSWKVEPLFVDESNCSPFKPENLADYEACTRGKGRVGSKLSLEQLVQPAIVPPPPISWYLRGITARTTEMLINDLLAESARLRESLDAERSNEVSHDLIEKRPIDHVRDIKERWRDRRRNAHPFHRRPSTSI 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4472821 4474274 - BLOR00394 Blo01g00394 54834

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00394 254 Coils Coil 194 214 - -
Blo01g00394 254 Pfam Domain of unknown function DUF220 90 161 IPR003863 -
Blo01g00394 254 Gene3D - 18 136 IPR023393 -
Blo01g00394 254 PANTHER PUTATIVE (DUF220)-RELATED 1 246 - -
Blo01g00394 254 SUPERFAMILY Bet v1-like 29 130 - -
Blo01g00394 254 PANTHER PUTATIVE (DUF220)-RELATED 1 246 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00394 - - - pavi:110753244 394.045
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g00394 Blo16g01159 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00394 Blo-Chr1:4472821 Blo16g01159 Blo-Chr16:40120854 3.78E-129 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g685 Blo01g00394 Blo16g01159 Bda01g02220 Bda11g01267 Bpe13g00497 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0666 . . . . . . . . Bda11g01267 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009569 2 2 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 2 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00394 Blo_Chr01 FPKM 8.05974 11.183224 44.592171 42.584618 148.297867 156.492722 147.064941 138.968887 146.115631 131.379532