Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00396 ATGAGAGGTTTAGAAAGAGCGGTTGAGCTGCTCAGACCCCTTGTAGAGGCCAGAGTGTGGGACTACGCCGTCGTTTGGAAACTTAGCGATGATCCCTCTGGTTCTAGGATTTTCGAGTGGTTGGATTGCTGCTGTAGTGGTGGCTATCAATGGGCTGATGTGAAGGAGGAAAAAGGAGAAATACATGTTAGTAGCCTCTGCGTAGATTCGTATTTTCAGCATCCTATAAGAACGAAGGCTTGCGAGGCACTTTTTCAGCTCCTTTCTTCTCTGCCCCAGCTCTCTGCGATCTATGAAGAAGTGGTGATATCTAATCAACCCAAATGGCTGAACTATTCTTATTGTTCTTTCTTGGCTCCTTCACCTGACTTAACTGGAACAAAAGTTCTGATCCCAATTGCTGGTGGCATAATCGAACTCTTTGTCACAAAGCAAGTACCAGAAGATAGAAAAGCAATTGATATTGTTATTGCTAGTCTCTGTGATTCCTCTTTCCATCAGGGATTAATGGCGGTGGAGAGCTATGACCATATTTCTAACTCTCAGCAGCTTCATCATTCAACAGCTGTAAACCCACAAAGTCTCATTCAGCCAAACTCTTATCCTACACTCGAAACATCATCGAACAGTTCAAACCTTTTATATGAAGACCCGCCTTTCGATTTCTATGCCTCTTTCACACCACAAAATTGGCAGTTGAGGCATCCACTGAACAATTTTCCTTGCTCAAAAAGGCTCGAGTACATTGAATATCTTCAGAATCAGCAAGAATTTGTTGGTTTGAATGGAGAAAACTATAACAAGAAAGTTAACACAAAATCTCATTACCATACGAGGAACATCGACCCAGAAAGAAATAGAAGGAAGAGACTTACCGATGGGCTTTTAACTCTGCGTTCTCTAGTCCCAAAGATATCCAAGATGGACAGAGCTTCAATTCTAGGAGATGCCATTGACTTCATAAAAGAGTTGCAGATGAAGGTAAGAGACCTCGAGAATGAAATCAAAGAAATGGAAGAAGATGACAGTATAAACAACAAACCCGAGCCAATCATATTGCCAGAGAATAGATTGAAAGAAATGAAGCATGTGAAGGTGGAAGTGGAAGTGAGCCAGCTCGAGAAAAGAAAACTCCTGATAAAGTTGTTGAGCGAGAAGAAAAGAGGTGGGTTTGGTAGGTTGATGGAGGCTATGGAGTCTCTTGGCCTTCAACTGGTTGATGCTAATATCACAACCTTACGCGACAACGTCTTGAACATTCTCGTGGTCGAGGCAAAGAAACCAGACATTCAACCAAAAACACTGAGAGACTCATTGATCAAAGTAGCAGGCCACAAAGGTCAGTGA 1347 42.39 MRGLERAVELLRPLVEARVWDYAVVWKLSDDPSGSRIFEWLDCCCSGGYQWADVKEEKGEIHVSSLCVDSYFQHPIRTKACEALFQLLSSLPQLSAIYEEVVISNQPKWLNYSYCSFLAPSPDLTGTKVLIPIAGGIIELFVTKQVPEDRKAIDIVIASLCDSSFHQGLMAVESYDHISNSQQLHHSTAVNPQSLIQPNSYPTLETSSNSSNLLYEDPPFDFYASFTPQNWQLRHPLNNFPCSKRLEYIEYLQNQQEFVGLNGENYNKKVNTKSHYHTRNIDPERNRRKRLTDGLLTLRSLVPKISKMDRASILGDAIDFIKELQMKVRDLENEIKEMEEDDSINNKPEPIILPENRLKEMKHVKVEVEVSQLEKRKLLIKLLSEKKRGGFGRLMEAMESLGLQLVDANITTLRDNVLNILVVEAKKPDIQPKTLRDSLIKVAGHKGQ 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4479393 4481637 - BLOR00396 Blo01g00396 54836

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00396 448 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 10 155 IPR025610 -
Blo01g00396 448 Coils Coil 314 341 - -
Blo01g00396 448 Gene3D - 262 342 IPR036638 GO:0046983
Blo01g00396 448 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 62 442 - -
Blo01g00396 448 PANTHER TRANSCRIPTION FACTOR BHLH90 62 442 - -
Blo01g00396 448 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 278 339 IPR036638 GO:0046983
Blo01g00396 448 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 275 324 IPR011598 GO:0046983
Blo01g00396 448 Pfam Helix-loop-helix DNA-binding domain 280 325 IPR011598 GO:0046983
Blo01g00396 448 SMART finulus 281 330 IPR011598 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00396 - - - qsu:112031104 350.517
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00396 Blo-Chr1:4479393 Blo04g00575 Blo-Chr4:4932599 8.64E-69 dispersed
Blo17g00087 Blo-Chr17:677593 Blo01g00396 Blo-Chr1:4479393 5.40E-18 dispersed
Blo01g00396 Blo-Chr1:4479393 Blo14g00682 Blo-Chr14:15294811 1.35E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g697 Blo01g00396 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g02335 . Cme10g00524 . . . . . . . . . . . Cma04g01734 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007013 1 2 1 1 0 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 6 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11836 PF14215 bHLH-MYC_N 1.30E-17 CL0161 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00396 Blo_Chr01 FPKM 0.0 0.0 1.626355 1.498302 16.281366 17.320183 15.904733 0.704435 0.82116 0.434474