Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00397 ATGGCGGCGAACTTCGTGAGGAAAGCTGTTCAGTCCACCTCCGGGTCTGCTAAAACCTTACTTACCCGTTCATCTTCTTCGCCATTGGCTTTCAAAGCCTGTAAATTTAGTGGAATCCCATCTGTTAGGACTACTTCTTCTCGGTTATCTGTTCAGAAGCTGCTCCCCTTCAGGCATCCAGTGGAGTTGGCTAGTTTGCAGTCATTGATGCCATTACACAGTGTTACCGCCTCAGCCTTGTTCACCTCATTGTTGTCTTTGCACAATCAAACTTGGGGTTGTCTATCTGAAGCTATGGCGGCGCTGGCTCCTGGCGTTCTGTTGAACTTGGTAAATGCTATGAATTCTGGCTTGAAACCTACCGGTGAGCATAGGAGCTCGCTTTTACAGGTCACCGACATCGTTCCAGCGGAGCTGGACGAGAAAAGCCTCTGGCCGAAACATGGATTCTATATCAAAGTATCAGATTCTTCCCACTCGATATACGCGAGTCTTCCTTCTGATCAAGACGATTTTGTTTTAAGTAACAAAATTCAGCTCGGCCAGTTCATTTACGTTGATAGATTGGAAACGGGATCGCCGGTTCCGGTCGTTAAAGGCGCCAAACCTCTCCCCGGACGACACCCTGTTGTCGGGACACCGGAACCGATTATGGGTCTACGAGTAAAGGGAGAGAAAGTGGACCAAAAGTCAGTCGGAAAGTTTTCTGCTCCGAGAAGGGGTTCTTGGGGAGGAAAAAATGGAGTGGACGGATTATCTTCGCCGATGGTATTGAAGCCAGTTCCTTTGAATTTTGACCCATGTACGCCGGCGAAGGAGATTCCCAATTTAACCTCTGCAAGAAGCCAGAATATATTTCCAGCGACTCCCTCCACGAGAGGGAAAGCCGGAAAGGACGGAAGCAGCGGCGGAGGGATTCGATGTTCTTTCAGCGGCGGAATGCTGTCGAAGATGGCTGATACAAAAGGAGAAACTCCATCTCTGCTGAGAAAAAGCTGCATTGCTTCGTCTTATTCAAAATTCTCTCGGAATAGAAGTGTTGGCGAAGGAGAGACGAAGATCTCGATGAGCTCTTTCAAGTCAGCTGAAAAGAAAATCCCCACTCCACCAAGAGTTTCATCTAAAGTAGAAGGAGAAACCCAGAGATTAGCTATCTCAAAGATGAATAATTCAGTGCCAGATCACGCAGGCAGTCTTTCTATGAGTTTACCAGGAAACCTTTGTTCGCTGGGCAAGGAAGCTCTCCAACAGAGAGAAACAGCTCAGAAGATTGCCTTGCGAGCACTTAGAGATGCTTCAGCCACCGAATCCATTGTTAGATCTCTCAAGATGCTTTCTCATTTGAGCAAATCAGCCAGGCCTGAATCTCCGACTCCCTGTTTCGAAAACTTTCTCGAATTTCACCGGCAGATCGTGCAGGCAGTGGCTGATATGGTGGCCATTGAAGAAGCGACATCAGCCACGATGTTAGCTCAAACCATCAACATGAACAAGAAGAAGAAGAAAGAAGAGGAGACCCATGAAGAAACTCCAATTCTTCATGAAATCAAACACAACTCTGTGGACCAGACCTGTAATCCAGAATCAAACACAGCCAAAAAAAGACGCGACTTACACAAATCCGTGGCAGTCTCAGAAACTAACGAGCAGAAAGGGAAGGAGGGTGACGAAAATAAGAAAACGCCATTAAATTCCAGTTTGGTAAGCACTATTGAACTGGGGAAGAAGATTGAGAAAGAAGCTGGAAACTGGTTCATGGGCTTTGTAGAGAAGGCATTGGAAAAGGGAATGAGGAAAGCAAGTGGAGAAGGAGATCAAGATATTAGAAAAGTTCCTCAGTCTCTTCTACTCAGAGTTATCAATTGGGTTGAGATCTCATGGCCATTGTTACAAGTTCTAGTTTTTGTACGAGGAGAAGATGAATGCACGGAAATTTCGAAGAAAAATGGGAAGTTTCTTCTGAAGGGAATGAGTTACTCTGAGCTGGAACTTACAGACTCTGTTGTTCTAAAGTTGTGCTCTCAATACAATTACTTTGCTGGTTTAAACAAGGATTTTAAGAAAATGTTGACTGAAAAGGCCGAATTCAAGGCATTGTCTTTGCGTGAGATTCGAAATGCAGCTGATGGAACTAAAAAGCGGAAGGCTCAAACTCTTTTCCGCTCCAGAAGACACATTAAATTTCTAACGGCAAACATGACTGTGATGATTGCATTGATGGGCATGAAGAGACATCTTACTGCTGCTGAGATTGTAGAGCAGGCTGTCTTTGCAAGGCGATTACTCACGAGCGAAGTTGGTTCCATTACCAACGTTGTTTTTATGGGGATGGGAGAACCACTTCATAACATCGACAATGTCATCAAGGCTGCGGACATAATGGTGCATGAGCAAGGACTCCATTTCAGTCCCCGCAAAGTCACTGTTTCAACAAGCGGGCTCGTCCCCCAGCTGAAACGTTTCCTGCATGAAAGCAATTGTGCTTTAGCTGTTAGTTTGAATGCAACGACCGATGAGGTTAGAAACTGGATAATGCCAATAAATCGGAAGTATAAGTTAGGTTTACTGCTTCAGACCCTCCGAGAAGAACTGCGCTTTAAACATAACTATAAAGTTCTATTTGAATATGTGATGCTTGCCGGGATAAACGATAGCAAAGACGACGCAAACAGGCTTGTCGATCTTGTTCGGGATATTCCTTGCAAGATTAATCTCATCTCCTTCAACCCTCACAGTGGATCTCAATTTAGACCCACGAGTGAGGAGAAAATGATTGAATTTCGGAATCTTTTGGCAGAAGCAGGGTGCACCGTCTTCTTAAGACCGAGCAGAGGGGACGATCAAATGGCTGCTTGTGGTCAGCTGGGCAAGCCTGGTACTGTCCAAGCGCCATTACTCCGTGTGCCTGAGCAATTTCGAATGGCCATGGAAGCATCTGCTTGA 2943 45.57 MAANFVRKAVQSTSGSAKTLLTRSSSSPLAFKACKFSGIPSVRTTSSRLSVQKLLPFRHPVELASLQSLMPLHSVTASALFTSLLSLHNQTWGCLSEAMAALAPGVLLNLVNAMNSGLKPTGEHRSSLLQVTDIVPAELDEKSLWPKHGFYIKVSDSSHSIYASLPSDQDDFVLSNKIQLGQFIYVDRLETGSPVPVVKGAKPLPGRHPVVGTPEPIMGLRVKGEKVDQKSVGKFSAPRRGSWGGKNGVDGLSSPMVLKPVPLNFDPCTPAKEIPNLTSARSQNIFPATPSTRGKAGKDGSSGGGIRCSFSGGMLSKMADTKGETPSLLRKSCIASSYSKFSRNRSVGEGETKISMSSFKSAEKKIPTPPRVSSKVEGETQRLAISKMNNSVPDHAGSLSMSLPGNLCSLGKEALQQRETAQKIALRALRDASATESIVRSLKMLSHLSKSARPESPTPCFENFLEFHRQIVQAVADMVAIEEATSATMLAQTINMNKKKKKEEETHEETPILHEIKHNSVDQTCNPESNTAKKRRDLHKSVAVSETNEQKGKEGDENKKTPLNSSLVSTIELGKKIEKEAGNWFMGFVEKALEKGMRKASGEGDQDIRKVPQSLLLRVINWVEISWPLLQVLVFVRGEDECTEISKKNGKFLLKGMSYSELELTDSVVLKLCSQYNYFAGLNKDFKKMLTEKAEFKALSLREIRNAADGTKKRKAQTLFRSRRHIKFLTANMTVMIALMGMKRHLTAAEIVEQAVFARRLLTSEVGSITNVVFMGMGEPLHNIDNVIKAADIMVHEQGLHFSPRKVTVSTSGLVPQLKRFLHESNCALAVSLNATTDEVRNWIMPINRKYKLGLLLQTLREELRFKHNYKVLFEYVMLAGINDSKDDANRLVDLVRDIPCKINLISFNPHSGSQFRPTSEEKMIEFRNLLAEAGCTVFLRPSRGDDQMAACGQLGKPGTVQAPLLRVPEQFRMAMEASA 980
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4497687 4505676 + BLOR00397 Blo01g00397 54837

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00397 980 PANTHER EXPRESSED PROTEIN 99 626 IPR010341 -
Blo01g00397 980 MobiDBLite consensus disorder prediction 358 377 - -
Blo01g00397 980 MobiDBLite consensus disorder prediction 496 563 - -
Blo01g00397 980 MobiDBLite consensus disorder prediction 496 516 - -
Blo01g00397 980 MobiDBLite consensus disorder prediction 529 560 - -
Blo01g00397 980 Pfam Radical SAM superfamily 741 886 IPR007197 GO:0003824|GO:0051536
Blo01g00397 980 Gene3D Aldolase class I 736 961 IPR013785 -
Blo01g00397 980 Pfam Plant protein of unknown function (DUF936) 350 611 IPR010341 -
Blo01g00397 980 Pfam Plant protein of unknown function (DUF936) 102 219 IPR010341 -
Blo01g00397 980 MobiDBLite consensus disorder prediction 284 305 - -
Blo01g00397 980 MobiDBLite consensus disorder prediction 229 248 - -
Blo01g00397 980 SUPERFAMILY Radical SAM enzymes 741 934 - -
Blo01g00397 980 ProSiteProfiles Radical SAM core domain profile. 696 947 IPR007197 GO:0003824|GO:0051536
Blo01g00397 980 PANTHER OS01G0108800 PROTEIN 99 626 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00397 - - - pvy:116123053 616.305
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g00397 Blo06g00875 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00397 Blo-Chr1:4497687 Blo15g00477 Blo-Chr15:7761640 2.75E-51 dispersed
Blo01g00397 Blo-Chr1:4497687 Blo06g00875 Blo-Chr6:32044726 3.39E-165 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g722 Blo01g00397 . Bda01g02223 . . Bpe10g00837 . Bma15g00187 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo06g00875 . . . . . Bma01g00051 . . . . . Cma05g00006 . Car05g00005 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011256 2 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00397 Blo_Chr01 FPKM 1.125683 1.012365 4.684652 4.240152 8.68926 6.697544 9.411623 7.816276 7.173305 9.768298