Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00399 ATGACGGCAGAGAATTGCAGCGCCGCGACTTTTCCTGTCAACACGCAGAGGGAGGAGGAAGATAATGGCGTCTCTGCTTCGATTACATCTCTGGGAATGGAGGGTAACAAAGAGATTGATTCTATTTCCTCCATCATTCCTGGGTGGTTCTCCGAGATCAGCCCCATGTGGCCAGCAGGAGAGGCACACTCCTTGAAGATAGGCAAGATTTTGTTTCAAGGGAAGTCTAACTACCAGAACGTCATCGTCTTTCAGTCGTCAACTTATGGCAAGGTTCTGGTTTTGGATGGAGTGATTCAGCTCACTGAGAGAGATGAATGTGCTTACCAAGAAATGATCGCTCACCTACCACTTTGCTCGATTCCAAACCCGAAAAAGGTTTTGGTCATCGGTGGAGGCGACGGTGGGGTTCTTCGAGAAGTTGCTCGTCATTCATCCGTCGAGAAAATAGATATCTGTGAAATTGATGAGATGGTTGTTAATGTTTCAAAGCAGTTTTTCCCGGATGTAGCAGTCGGATACGACGATCCTCGGGTCAAACTTCACATCGGCGACGGAGTTGCGTTTTTGAAGGCTGTCCCGGAAAGAACTTACGATGCGATTATAGTTGATTCTTCTGATCCAATCGGTCCTGCTCAAGAGCTTTTTGAGAAGCCTTTCTTTGAGTCGGTAGCAAAGGCTTTACGTCCGGGAGGGGCCGTGTGCACTCAAGCCGAAAGCATATGGCTTCACATGCACATAATCGAGGAAATTGTGGCGAATTGCCGTCAAGTGTTCAAAGGCTCGGTCAATTATGCGTGGACTTCGGTTCCGACATATCCGAGCGGCGTAATTGGTTTTATGCTTTGTTCGACCGAGGGGCCGGCTGTTGATTTCACGCACCCCGTTAATTCGATCGAGGGAGTCGACACTCAAAACAACTCGAGAGGGCCCTTGAAATTTTACAATTCCGAGATTCACAAGGCAGCCTTCTGTTTGCCATCTTTTGCCAAAAGGGTTATTGATTCAAAAGCAAATAAAAATGATATTTTGCAAATTGTGAGACCTCCTCTTATGGATCTGGAAAGTGGAGTAAATGTAAACTGTGCTCAGTTGCAGACTCAATCGTGGAAGACAATTCTTACTCTTGCCTATCAGAGCCTTGGAGTGGTCTATGGCGATTTAAGCACTTCCCCTCTATACGTGTTTAGAAACACTTTCGCCGAAGGAGAAATTGAACACACGGCTTCTAACGATGAGATATACGGCGTTTTATCCTTCGTTTTCTGGACTCTCACCATTATTCCTCTGCTAAAATATGTTTTCATCGTTCTCAAGGCGGATGATAATGGCGAGGGAGGGACTTTTGCTCTCTACTCCTTACTCTGTCGACACGCCCAAGTCGGGTCGTTTCCGAATGTTCAGGTATCAGATGAGGAACTCGTTGTGTACAAGAAGGATTCCATTAAATCACCTCCCCATGCAAGCTTTGCTTCCAAGCTGAAGTCCACTTTGGAAACTCACAGGGTTTTGCAGAGATTTTTGCTTGTCATGGCTTTGATTGGGACTTGTATGGTGATTGGCGATGGCATCCTCACACCAGCCATTTCTGTTTTATCTGCGGTTTCGGGCATAGAGTACACCATGGCCAAAGAGCATCACAAATACGTGGAGATCCCAGTTACATGCATCATATTGATAGGCCTGTTTGCTCTTCAACATTACGGCACGCACAGGGTCGGGTTCATGTTTGCGCCTATTGTAACCACATGGCTTCTGTGCATTAGCTTAATTGGTGTTTACAATATTATTTACTGGAATCCACACGTGTATCAAGCTCTGTCTCCTCATTACATGCTCCAATTTTTGAAGAAAACTCAACGAGGAGGTTGGGTGGCACTGGGTGGAATTTTGCTCTGTATAACCGGTTCAGAGGCAATGTATGCCGATCTCGGACACTTCTCTCAATTTTCAATCAAGCTTGCTTTCACCTTTATGGTTTACCCATCTTTGATTCTAGCTTACTTGGGGCAAGCTGCTTATCTCTCTCAAAATCATACTCTCCCGGATGATTATCGGATTGGTTTTTATGTATCTGTACCAGAGAAATTAAGATGGCCTGTTCTGGTAATCGCCATACTTGCTGCAGTAGTAGGAGGCCAAGCCATTATCACTGGAACTTTCTCCATCATTAAACAATGCTCTTCTTTTGGATGCTTCCCTAAAGTGAAAGTAGTCCATACTTCGTCAAAGATCCACGGTCAGATTTACATCCCGGAAATCAACTGGATCTTGATGCTCTTGTGTTTGGCCGTGACTGTCGGTTTTAGAGACACCATGCGCTTAGGGAATGCTGCGGGTTTGGCTGTCATCACAGTGATGTTGGTAACGACCTGCCTAATGTCTCTCGTTATCGTCCTTTGCTGGCATCGAAGTGTTCTTCTTGCAATCGGCTTTATAATCTTCTTTGGAACCATCGAAGCTCTCTACTTCTCTGCATCTCTCATCAAGTTTTTTCAAGGAGCGTGGGTGCCGGTTGCCCTCGCGTTATTCTTTTTGGTCGTCATGTACGTCTGGCATTACGGTACGCAAAAGAAGTACGAATTTGATTTAGAAAACAAAGTCTCCATTAATTGGCTTCTCAGTCTTGGGCCGAGTTTAGGTATAGTAAGAGTCCGGGGCATCGGCATTATAAACACCGAGCTCGAGTCAGGCATCCCAGCCACATTCTCTCATTTCGTCACAAATCTTCCTGCCTTCCACCAAGTCCTCGTTTTTCTATGCATCAAATCCATCCCACTTGCTCATGTTAAACCTGAGGAGAGATTTCTTGTGGGACGTGTTGGCCCCCGCGAGTTTAGGCTCTACCGATGCATCGTCCGATATGGATATCGCGATGTGCACAAGGACAATATCGAGTTTGAGAAGGATCTTCTCTGCAGCATAGCTGAGTACATAAGGTCGGGAAGCAGCGATGACAATCGCAAGGATGACGATAAAATGGCGGTTGTGGGGACGTCTTCTACCCATACGCACAGAGTTCAAATGAAAGAAGATTACACAAACTGCGAAGGTGTGGCCGGAACATCAAAGCTCCAGGAAATACAGTCTCCGCCGGAGCTCCAACCGAGGAAAAGGGTAAGGTTTATTTTGCCAGAAAGTCCGATAATCGACAGGGAGAATATGAACGAATTGAAGGACCTGATGGAAGCACGGGAGGCGGGAATCGCGTATATTTTAGGACGGTCCCACATGAAAGCAAAGCAAGGATCAAGCATGGTAAAAAAGCTTGTGATTAACTATGGCTACGAGTTGTTGAGAAAAAACAGCAGAGAACCCAGCCACCCGCTTACTTTATCTCATGCATCCACTATTGAAGTGGGGATGATGTACAATGTTTAG 3381 45.87 MTAENCSAATFPVNTQREEEDNGVSASITSLGMEGNKEIDSISSIIPGWFSEISPMWPAGEAHSLKIGKILFQGKSNYQNVIVFQSSTYGKVLVLDGVIQLTERDECAYQEMIAHLPLCSIPNPKKVLVIGGGDGGVLREVARHSSVEKIDICEIDEMVVNVSKQFFPDVAVGYDDPRVKLHIGDGVAFLKAVPERTYDAIIVDSSDPIGPAQELFEKPFFESVAKALRPGGAVCTQAESIWLHMHIIEEIVANCRQVFKGSVNYAWTSVPTYPSGVIGFMLCSTEGPAVDFTHPVNSIEGVDTQNNSRGPLKFYNSEIHKAAFCLPSFAKRVIDSKANKNDILQIVRPPLMDLESGVNVNCAQLQTQSWKTILTLAYQSLGVVYGDLSTSPLYVFRNTFAEGEIEHTASNDEIYGVLSFVFWTLTIIPLLKYVFIVLKADDNGEGGTFALYSLLCRHAQVGSFPNVQVSDEELVVYKKDSIKSPPHASFASKLKSTLETHRVLQRFLLVMALIGTCMVIGDGILTPAISVLSAVSGIEYTMAKEHHKYVEIPVTCIILIGLFALQHYGTHRVGFMFAPIVTTWLLCISLIGVYNIIYWNPHVYQALSPHYMLQFLKKTQRGGWVALGGILLCITGSEAMYADLGHFSQFSIKLAFTFMVYPSLILAYLGQAAYLSQNHTLPDDYRIGFYVSVPEKLRWPVLVIAILAAVVGGQAIITGTFSIIKQCSSFGCFPKVKVVHTSSKIHGQIYIPEINWILMLLCLAVTVGFRDTMRLGNAAGLAVITVMLVTTCLMSLVIVLCWHRSVLLAIGFIIFFGTIEALYFSASLIKFFQGAWVPVALALFFLVVMYVWHYGTQKKYEFDLENKVSINWLLSLGPSLGIVRVRGIGIINTELESGIPATFSHFVTNLPAFHQVLVFLCIKSIPLAHVKPEERFLVGRVGPREFRLYRCIVRYGYRDVHKDNIEFEKDLLCSIAEYIRSGSSDDNRKDDDKMAVVGTSSTHTHRVQMKEDYTNCEGVAGTSKLQEIQSPPELQPRKRVRFILPESPIIDRENMNELKDLMEAREAGIAYILGRSHMKAKQGSSMVKKLVINYGYELLRKNSREPSHPLTLSHASTIEVGMMYNV 1126
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4520270 4529063 + BLOR00399 Blo01g00399 54839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00399 1126 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 127 140 IPR030373 -
Blo01g00399 1126 TIGRFAM speE: spermidine synthase 49 329 IPR001045 GO:0003824
Blo01g00399 1126 Pfam K+ potassium transporter 378 959 IPR003855 GO:0015079|GO:0016020|GO:0071805
Blo01g00399 1126 TIGRFAM kup: potassium uptake protein 376 1126 IPR003855 GO:0015079|GO:0016020|GO:0071805
Blo01g00399 1126 Gene3D Vaccinia Virus protein VP39 101 339 IPR029063 -
Blo01g00399 1126 MobiDBLite consensus disorder prediction 1 23 - -
Blo01g00399 1126 Hamap Polyamine aminopropyltransferase [speE]. 48 335 IPR001045 GO:0003824
Blo01g00399 1126 CDD AdoMet_MTases 126 237 - -
Blo01g00399 1126 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 45 335 IPR029063 -
Blo01g00399 1126 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 47 285 IPR030374 -
Blo01g00399 1126 Pfam Spermine/spermidine synthase domain 106 292 - -
Blo01g00399 1126 Pfam Spermidine synthase tetramerisation domain 48 103 IPR035246 -
Blo01g00399 1126 PANTHER POTASSIUM TRANSPORTER 6 352 1126 - -
Blo01g00399 1126 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 352 1126 IPR003855 GO:0015079|GO:0016020|GO:0071805
Blo01g00399 1126 Gene3D Spermidine synthase, tetramerisation domain 41 100 IPR037163 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo01g00399 Blo11g00905 CCT
Blo01g00399 Blo06g00871 CCT
Blo01g00399 Blo11g00905 ECH
Blo01g00399 Blo06g00871 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00399 Blo-Chr1:4520270 Blo11g00671 Blo-Chr11:7429037 0 dispersed
Blo06g00871 Blo-Chr6:32025650 Blo01g00399 Blo-Chr1:4520270 0 dispersed
Blo11g00905 Blo-Chr11:18562131 Blo01g00399 Blo-Chr1:4520270 7.22E-72 dispersed
Blo15g00090 Blo-Chr15:751268 Blo01g00399 Blo-Chr1:4520270 1.75E-128 dispersed
Blo18g00262 Blo-Chr18:2786909 Blo01g00399 Blo-Chr1:4520270 1.57E-28 dispersed
Blo02g00544 Blo-Chr2:9361029 Blo01g00399 Blo-Chr1:4520270 1.29E-34 transposed
Blo01g00399 Blo-Chr1:4520270 Blo13g00052 Blo-Chr13:772326 4.27E-135 wgd
Blo01g00399 Blo-Chr1:4520270 Blo15g00274 Blo-Chr15:2961432 1.06E-114 wgd
Blo01g00399 Blo-Chr1:4520270 Blo16g01154 Blo-Chr16:40057157 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00399 K03549 - cpap:110825734 1202.96