Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Blo01g00399 | ATGACGGCAGAGAATTGCAGCGCCGCGACTTTTCCTGTCAACACGCAGAGGGAGGAGGAAGATAATGGCGTCTCTGCTTCGATTACATCTCTGGGAATGGAGGGTAACAAAGAGATTGATTCTATTTCCTCCATCATTCCTGGGTGGTTCTCCGAGATCAGCCCCATGTGGCCAGCAGGAGAGGCACACTCCTTGAAGATAGGCAAGATTTTGTTTCAAGGGAAGTCTAACTACCAGAACGTCATCGTCTTTCAGTCGTCAACTTATGGCAAGGTTCTGGTTTTGGATGGAGTGATTCAGCTCACTGAGAGAGATGAATGTGCTTACCAAGAAATGATCGCTCACCTACCACTTTGCTCGATTCCAAACCCGAAAAAGGTTTTGGTCATCGGTGGAGGCGACGGTGGGGTTCTTCGAGAAGTTGCTCGTCATTCATCCGTCGAGAAAATAGATATCTGTGAAATTGATGAGATGGTTGTTAATGTTTCAAAGCAGTTTTTCCCGGATGTAGCAGTCGGATACGACGATCCTCGGGTCAAACTTCACATCGGCGACGGAGTTGCGTTTTTGAAGGCTGTCCCGGAAAGAACTTACGATGCGATTATAGTTGATTCTTCTGATCCAATCGGTCCTGCTCAAGAGCTTTTTGAGAAGCCTTTCTTTGAGTCGGTAGCAAAGGCTTTACGTCCGGGAGGGGCCGTGTGCACTCAAGCCGAAAGCATATGGCTTCACATGCACATAATCGAGGAAATTGTGGCGAATTGCCGTCAAGTGTTCAAAGGCTCGGTCAATTATGCGTGGACTTCGGTTCCGACATATCCGAGCGGCGTAATTGGTTTTATGCTTTGTTCGACCGAGGGGCCGGCTGTTGATTTCACGCACCCCGTTAATTCGATCGAGGGAGTCGACACTCAAAACAACTCGAGAGGGCCCTTGAAATTTTACAATTCCGAGATTCACAAGGCAGCCTTCTGTTTGCCATCTTTTGCCAAAAGGGTTATTGATTCAAAAGCAAATAAAAATGATATTTTGCAAATTGTGAGACCTCCTCTTATGGATCTGGAAAGTGGAGTAAATGTAAACTGTGCTCAGTTGCAGACTCAATCGTGGAAGACAATTCTTACTCTTGCCTATCAGAGCCTTGGAGTGGTCTATGGCGATTTAAGCACTTCCCCTCTATACGTGTTTAGAAACACTTTCGCCGAAGGAGAAATTGAACACACGGCTTCTAACGATGAGATATACGGCGTTTTATCCTTCGTTTTCTGGACTCTCACCATTATTCCTCTGCTAAAATATGTTTTCATCGTTCTCAAGGCGGATGATAATGGCGAGGGAGGGACTTTTGCTCTCTACTCCTTACTCTGTCGACACGCCCAAGTCGGGTCGTTTCCGAATGTTCAGGTATCAGATGAGGAACTCGTTGTGTACAAGAAGGATTCCATTAAATCACCTCCCCATGCAAGCTTTGCTTCCAAGCTGAAGTCCACTTTGGAAACTCACAGGGTTTTGCAGAGATTTTTGCTTGTCATGGCTTTGATTGGGACTTGTATGGTGATTGGCGATGGCATCCTCACACCAGCCATTTCTGTTTTATCTGCGGTTTCGGGCATAGAGTACACCATGGCCAAAGAGCATCACAAATACGTGGAGATCCCAGTTACATGCATCATATTGATAGGCCTGTTTGCTCTTCAACATTACGGCACGCACAGGGTCGGGTTCATGTTTGCGCCTATTGTAACCACATGGCTTCTGTGCATTAGCTTAATTGGTGTTTACAATATTATTTACTGGAATCCACACGTGTATCAAGCTCTGTCTCCTCATTACATGCTCCAATTTTTGAAGAAAACTCAACGAGGAGGTTGGGTGGCACTGGGTGGAATTTTGCTCTGTATAACCGGTTCAGAGGCAATGTATGCCGATCTCGGACACTTCTCTCAATTTTCAATCAAGCTTGCTTTCACCTTTATGGTTTACCCATCTTTGATTCTAGCTTACTTGGGGCAAGCTGCTTATCTCTCTCAAAATCATACTCTCCCGGATGATTATCGGATTGGTTTTTATGTATCTGTACCAGAGAAATTAAGATGGCCTGTTCTGGTAATCGCCATACTTGCTGCAGTAGTAGGAGGCCAAGCCATTATCACTGGAACTTTCTCCATCATTAAACAATGCTCTTCTTTTGGATGCTTCCCTAAAGTGAAAGTAGTCCATACTTCGTCAAAGATCCACGGTCAGATTTACATCCCGGAAATCAACTGGATCTTGATGCTCTTGTGTTTGGCCGTGACTGTCGGTTTTAGAGACACCATGCGCTTAGGGAATGCTGCGGGTTTGGCTGTCATCACAGTGATGTTGGTAACGACCTGCCTAATGTCTCTCGTTATCGTCCTTTGCTGGCATCGAAGTGTTCTTCTTGCAATCGGCTTTATAATCTTCTTTGGAACCATCGAAGCTCTCTACTTCTCTGCATCTCTCATCAAGTTTTTTCAAGGAGCGTGGGTGCCGGTTGCCCTCGCGTTATTCTTTTTGGTCGTCATGTACGTCTGGCATTACGGTACGCAAAAGAAGTACGAATTTGATTTAGAAAACAAAGTCTCCATTAATTGGCTTCTCAGTCTTGGGCCGAGTTTAGGTATAGTAAGAGTCCGGGGCATCGGCATTATAAACACCGAGCTCGAGTCAGGCATCCCAGCCACATTCTCTCATTTCGTCACAAATCTTCCTGCCTTCCACCAAGTCCTCGTTTTTCTATGCATCAAATCCATCCCACTTGCTCATGTTAAACCTGAGGAGAGATTTCTTGTGGGACGTGTTGGCCCCCGCGAGTTTAGGCTCTACCGATGCATCGTCCGATATGGATATCGCGATGTGCACAAGGACAATATCGAGTTTGAGAAGGATCTTCTCTGCAGCATAGCTGAGTACATAAGGTCGGGAAGCAGCGATGACAATCGCAAGGATGACGATAAAATGGCGGTTGTGGGGACGTCTTCTACCCATACGCACAGAGTTCAAATGAAAGAAGATTACACAAACTGCGAAGGTGTGGCCGGAACATCAAAGCTCCAGGAAATACAGTCTCCGCCGGAGCTCCAACCGAGGAAAAGGGTAAGGTTTATTTTGCCAGAAAGTCCGATAATCGACAGGGAGAATATGAACGAATTGAAGGACCTGATGGAAGCACGGGAGGCGGGAATCGCGTATATTTTAGGACGGTCCCACATGAAAGCAAAGCAAGGATCAAGCATGGTAAAAAAGCTTGTGATTAACTATGGCTACGAGTTGTTGAGAAAAAACAGCAGAGAACCCAGCCACCCGCTTACTTTATCTCATGCATCCACTATTGAAGTGGGGATGATGTACAATGTTTAG | 3381 | 45.87 | MTAENCSAATFPVNTQREEEDNGVSASITSLGMEGNKEIDSISSIIPGWFSEISPMWPAGEAHSLKIGKILFQGKSNYQNVIVFQSSTYGKVLVLDGVIQLTERDECAYQEMIAHLPLCSIPNPKKVLVIGGGDGGVLREVARHSSVEKIDICEIDEMVVNVSKQFFPDVAVGYDDPRVKLHIGDGVAFLKAVPERTYDAIIVDSSDPIGPAQELFEKPFFESVAKALRPGGAVCTQAESIWLHMHIIEEIVANCRQVFKGSVNYAWTSVPTYPSGVIGFMLCSTEGPAVDFTHPVNSIEGVDTQNNSRGPLKFYNSEIHKAAFCLPSFAKRVIDSKANKNDILQIVRPPLMDLESGVNVNCAQLQTQSWKTILTLAYQSLGVVYGDLSTSPLYVFRNTFAEGEIEHTASNDEIYGVLSFVFWTLTIIPLLKYVFIVLKADDNGEGGTFALYSLLCRHAQVGSFPNVQVSDEELVVYKKDSIKSPPHASFASKLKSTLETHRVLQRFLLVMALIGTCMVIGDGILTPAISVLSAVSGIEYTMAKEHHKYVEIPVTCIILIGLFALQHYGTHRVGFMFAPIVTTWLLCISLIGVYNIIYWNPHVYQALSPHYMLQFLKKTQRGGWVALGGILLCITGSEAMYADLGHFSQFSIKLAFTFMVYPSLILAYLGQAAYLSQNHTLPDDYRIGFYVSVPEKLRWPVLVIAILAAVVGGQAIITGTFSIIKQCSSFGCFPKVKVVHTSSKIHGQIYIPEINWILMLLCLAVTVGFRDTMRLGNAAGLAVITVMLVTTCLMSLVIVLCWHRSVLLAIGFIIFFGTIEALYFSASLIKFFQGAWVPVALALFFLVVMYVWHYGTQKKYEFDLENKVSINWLLSLGPSLGIVRVRGIGIINTELESGIPATFSHFVTNLPAFHQVLVFLCIKSIPLAHVKPEERFLVGRVGPREFRLYRCIVRYGYRDVHKDNIEFEKDLLCSIAEYIRSGSSDDNRKDDDKMAVVGTSSTHTHRVQMKEDYTNCEGVAGTSKLQEIQSPPELQPRKRVRFILPESPIIDRENMNELKDLMEAREAGIAYILGRSHMKAKQGSSMVKKLVINYGYELLRKNSREPSHPLTLSHASTIEVGMMYNV | 1126 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 4520270 | 4529063 | + | BLOR00399 | Blo01g00399 | 54839 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Blo01g00399 | 1126 | ProSitePatterns | Polyamine biosynthesis (PABS) domain signature. | 127 | 140 | IPR030373 | - | |
Blo01g00399 | 1126 | TIGRFAM | speE: spermidine synthase | 49 | 329 | IPR001045 | GO:0003824 | |
Blo01g00399 | 1126 | Pfam | K+ potassium transporter | 378 | 959 | IPR003855 | GO:0015079|GO:0016020|GO:0071805 | |
Blo01g00399 | 1126 | TIGRFAM | kup: potassium uptake protein | 376 | 1126 | IPR003855 | GO:0015079|GO:0016020|GO:0071805 | |
Blo01g00399 | 1126 | Gene3D | Vaccinia Virus protein VP39 | 101 | 339 | IPR029063 | - | |
Blo01g00399 | 1126 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Blo01g00399 | 1126 | Hamap | Polyamine aminopropyltransferase [speE]. | 48 | 335 | IPR001045 | GO:0003824 | |
Blo01g00399 | 1126 | CDD | AdoMet_MTases | 126 | 237 | - | - | |
Blo01g00399 | 1126 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 45 | 335 | IPR029063 | - | |
Blo01g00399 | 1126 | ProSiteProfiles | Polyamine biosynthesis (PABS) domain profile. | 47 | 285 | IPR030374 | - | |
Blo01g00399 | 1126 | Pfam | Spermine/spermidine synthase domain | 106 | 292 | - | - | |
Blo01g00399 | 1126 | Pfam | Spermidine synthase tetramerisation domain | 48 | 103 | IPR035246 | - | |
Blo01g00399 | 1126 | PANTHER | POTASSIUM TRANSPORTER 6 | 352 | 1126 | - | - | |
Blo01g00399 | 1126 | PANTHER | OSMOTIC STRESS POTASSIUM TRANSPORTER | 352 | 1126 | IPR003855 | GO:0015079|GO:0016020|GO:0071805 | |
Blo01g00399 | 1126 | Gene3D | Spermidine synthase, tetramerisation domain | 41 | 100 | IPR037163 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Blo01g00399 | Blo11g00905 | CCT | |
Blo01g00399 | Blo06g00871 | CCT | |
Blo01g00399 | Blo11g00905 | ECH | |
Blo01g00399 | Blo06g00871 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Blo01g00399 | Blo-Chr1:4520270 | Blo11g00671 | Blo-Chr11:7429037 | 0 | dispersed | |
Blo06g00871 | Blo-Chr6:32025650 | Blo01g00399 | Blo-Chr1:4520270 | 0 | dispersed | |
Blo11g00905 | Blo-Chr11:18562131 | Blo01g00399 | Blo-Chr1:4520270 | 7.22E-72 | dispersed | |
Blo15g00090 | Blo-Chr15:751268 | Blo01g00399 | Blo-Chr1:4520270 | 1.75E-128 | dispersed | |
Blo18g00262 | Blo-Chr18:2786909 | Blo01g00399 | Blo-Chr1:4520270 | 1.57E-28 | dispersed | |
Blo02g00544 | Blo-Chr2:9361029 | Blo01g00399 | Blo-Chr1:4520270 | 1.29E-34 | transposed | |
Blo01g00399 | Blo-Chr1:4520270 | Blo13g00052 | Blo-Chr13:772326 | 4.27E-135 | wgd | |
Blo01g00399 | Blo-Chr1:4520270 | Blo15g00274 | Blo-Chr15:2961432 | 1.06E-114 | wgd | |
Blo01g00399 | Blo-Chr1:4520270 | Blo16g01154 | Blo-Chr16:40057157 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Blo01g00399 | K03549 | - | cpap:110825734 | 1202.96 |