Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00400 ATGATGAAGTTTGAGAGTGGATATAATGTGGAGACTGTATTTGATGGAAGCAAGCTTGGCATTGAACCGTACTCTGTTGAAGTTTTGCCTGGTGGGGAGCTTCTCATAATGGATTCAGCAAATAGCAACATCTACAGGATCTCTGCTTCTCTGTCTCTTTACAGCAGGCCGAAGCTGGTTGCAGGATCTGCGGAAGGATACTCTGGACATGTGGATGGGAAGGCTCGAGATGCCCGGATGAACCACCCCAAAGGCCTTGCAGTTGACGATAGGGGAAACATTTATGTTGCAGACACAATGAATTTAGCCATCAGGAAGATAAGTGATTCTGGGGTAACGACAATTGCCGGAGGCAAATGGGGACGGGGAGGTGGCCACGTTGATGGGCCAAGTGAGGATTCAAAATTCTCAAACGACTTTGATGTCGTATATATCGGAAGTAGTTGCTCACTTCTCGTCGTAGACAGAGGAAATCGTGCAATTCGGGAGATTCAACTTCATTTCGATGATTGTGCTTATCAATACGGCAGTGGTTTTCCGATGGGAATAGCAATGCTTGTCGGGGCGGGCTTCTTCGGTTATATTCTGGCATTCCTGCAATGTAGAATGACCTCCTTTGGCACCTCACAGAATGGTCCAATGTTGACAAACATTCCACCAAATTCATATCAGAAGCCTCTGAAATCTGTCAGGCCGCCATTAATCCCTTCGGAAGAAGAGTCGGAGAAGCAAGAAGAAGGTTTCTTCATTTCCATAGGAAAGCTTGTCGCTAACACAGGGACATCCGTCTTAGAAATTCTGGGTGGGACTTTTCCTGGCCTGAAAAATAAGTCTTCAAGCTACAAATACGATATCCAACAACAACACTCCAATTCTTGGCCACTACAGGAAAGTTTCGTTATACCAAACGAAGACGAACCCCCTTCGATTGAAACGAGAACTCCCACCCCTCGGAAAACCTATGCTTTCATGTCTAAAGATGCCGAAAAAATGCACCAACTGAGGCAAAGCAAGGCGTTCTACAACGGGTGGGATGGCGATAAGCCCCAGCCCCAGCCACAGCAAAAACAGCAGCACCATCATCAGTATCTTTCTTCGACCCCACATACTTACTACGAGAGGAGCCACGAGAGAACCAATGAGATTGTTTTCGGGGCCATTCAGGAACTCGACAGGAAAGGAAAATCGTCCGTTGTAAGACCCATTGATTATGCCGATCCTAGGCTTGAGCATCATAATCTTCGGGCGCGAAATGCTTCGACGGCCTATAACCATGGCTATTGA 1284 46.81 MMKFESGYNVETVFDGSKLGIEPYSVEVLPGGELLIMDSANSNIYRISASLSLYSRPKLVAGSAEGYSGHVDGKARDARMNHPKGLAVDDRGNIYVADTMNLAIRKISDSGVTTIAGGKWGRGGGHVDGPSEDSKFSNDFDVVYIGSSCSLLVVDRGNRAIREIQLHFDDCAYQYGSGFPMGIAMLVGAGFFGYILAFLQCRMTSFGTSQNGPMLTNIPPNSYQKPLKSVRPPLIPSEEESEKQEEGFFISIGKLVANTGTSVLEILGGTFPGLKNKSSSYKYDIQQQHSNSWPLQESFVIPNEDEPPSIETRTPTPRKTYAFMSKDAEKMHQLRQSKAFYNGWDGDKPQPQPQQKQQHHHQYLSSTPHTYYERSHERTNEIVFGAIQELDRKGKSSVVRPIDYADPRLEHHNLRARNASTAYNHGY 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4530688 4532420 + BLOR00400 Blo01g00400 54840

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00400 427 Pfam NHL repeat 81 105 IPR001258 GO:0005515
Blo01g00400 427 SUPERFAMILY NHL repeat 10 165 - -
Blo01g00400 427 MobiDBLite consensus disorder prediction 341 372 - -
Blo01g00400 427 PANTHER NHL DOMAIN-CONTAINING PROTEIN 1 427 - -
Blo01g00400 427 PANTHER - 1 427 - -
Blo01g00400 427 MobiDBLite consensus disorder prediction 348 370 - -
Blo01g00400 427 Gene3D - 4 165 IPR011042 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00400 - - - mnt:21410414 660.218
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g00400 Blo16g01153 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00400 Blo-Chr1:4530688 Blo11g00671 Blo-Chr11:7429037 2.57E-155 dispersed
Blo19g00016 Blo-Chr19:256227 Blo01g00400 Blo-Chr1:4530688 6.29E-76 transposed
Blo01g00400 Blo-Chr1:4530688 Blo16g01153 Blo-Chr16:40054977 2.20E-40 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g749 Blo01g00400 Blo16g01153 Bda01g02227 Bda11g01257 Bpe13g01455 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01257 . . . Bma06g00626 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005531 1 1 1 2 0 1 2 1 1 1 1 1 1 1 1 1 1 3 2 1 1 2 1 1 1 1 1 3 3 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00400 Blo_Chr01 FPKM 4.971008 3.706748 0.115973 0.333605 0.211843 0.146285 0.263865 0.0 0.0 0.0