Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00402 ATGTTATTGTGCTCTCGAATCAGGGGAACACTCGCTTTCCGTTTTCTTCGTCGCTCCTCCTCCGCCTCTGGCTTCATTTCTCCGCTGCTCTGTTCTGAAGCATCTCTCTGCTGTTTTTGCTCCTCTTTTCCGCCCTCGGTGGCTACGATGGCGGCAGGGAATTTCAAAGATGAGGACTACCTCAAAGTTATAGTTCCTAAGCGTATCCAGCTCTTTGAGTCCATCAAAGCTCAGCGGCTTGCTCATCGTCAATCACTCCCTTCGCATTCCATCAAGATTACTTTGCCGGACGGAACAGTAAAGGAAGGTAAGAAGTGGCAAACAACTCCATTTGATATTGCGAAGGAACTTTCAAAAATTTTGGCGGCAAACGCTTTGATTTCTCAAGTGGACGGAGTTTTATGGGACATGAATAGGTCGCTAGAGAGTGACTGCGAGCTGAAGATTTTCACTTTCAATAGCGACGAAGGGCGTGACACGTTTTGGCATTCTAGTGCTCATATACTTGGGCAGTCACTAGAGATGGAATACGGCTGCAAACTTTGCATTGGACCTTGCACCACTAGAGGAGAGTTAGCGACATCTTCCAGTGGATTCTATTATGATGCATTTTACGGTGATTTAGGCTTGAACGATGACCATTTCAAAAAAATTGAGGCGGGGGCACTAAAGGCTGTTGCGGAGAAACAGCCATTTGAGCGCATTGAAGTTGAGATTATCAAAGATTTGCCAGAAGACAAGACTATAACAGTATATAGATGTGGCCCTCTAGTTGATTTATGTCGTGGCCCCCACATTCCAAACACATCCTTCGTGAAGGCAATTGCATGTCTGAAGGCTTCATCAGCCTATTGGAGGGGAAATAAAGATCGTGAAAGCTTACAAAGAGTTTATGGTATATCTTATCCTGATCAAAAAAGTTTGAAGGAATATCTTAATATGTTGGAAGAAGCCAAGAAGTATGACCATCGGTTGTTGGGTACAAAACAAGAGCTTTTCTTTTGCCACCCACTTAGCCCAGGAAGTTGGTTCTTTCTCCCTCACGGGGCTAGGATCTACAACAAACTGATGGAGTTTATACGGACTCAATACAGGGATAGAGGTTATGAAGAGATTTTATCTCCAAATATGTACAACATGCAACTTTGGGAAACATCTGGTCATGCTGCAAATTACAAGGAGAATATGTTTGTATTTGAGTATGGACATTATTTAAAAAATGTAGAACTTCCTCTTCGATTGGCTGATTTTGGAGTGTTGCATCGTAATGAGGCTAGTGGTGCTCTGACTGGACTTACCCGTGTGCGGAGGTTTCAACAGGATGATGCTCATATCTTCTGCTCAAAGTCTCAGATAAAAGATGAAGTGAGGGGCGTCTTAGAATTCATCAAATATATCCACAACGTTTTTGGGTTCACCTTTGATCTGAAGTTATCAACGAGGCCTGAAAAATTTCTTGGAGACATAGCTACATGGGAGGAAGCTGAAGCAGCACTTACAGAAGCATTAAATGAATTTGGGAAACCCTGGCTGATCAACGAAGGGGATGGTGCATTTTATGGGCCAAAGATAGATATTAGCGTATCTGATGCACTGAAAAGGAAATTTCAATGTGCAACGCTACAGTTGGACTTCCAGCTTCCTAAGCGTTTTGAATTATATTACTCTACAGAGGATGAAGCGAAGAGAGAGATGCCCGTCATGATACATAGAGCCATTTTGGGGTCTGTGGAGCGGATGTTTGCTATTCTATTGGAGCATTACAAGGGGAAATGGCCTTTCTGGCTCAGTCCACGTCAAGCCATTGTTTGTCCAGTGTCAGAAAAATCCCAGTCTTACGCACTTAAAGTGCGTGATCAAATTCACCATGCCGGTTATTACGATGATGTGGATTCGACTGATAGGAAGATCCAAAAGAAGGTACGAGAAGCCCAGTTGGCGCAGTACAACTTTATTTTGGTTGTCGGAGAGGAAGAGGCCAACACTGGACAGGTGAGTGTTCGAGTGAGAGACAAAGCCGATCACCGAGTAATGAGCATCGAGAGCTTACTCAAACACTTCGAGCAAGAAAATGCAGCTTTTCATTAG 2088 43.68 MLLCSRIRGTLAFRFLRRSSSASGFISPLLCSEASLCCFCSSFPPSVATMAAGNFKDEDYLKVIVPKRIQLFESIKAQRLAHRQSLPSHSIKITLPDGTVKEGKKWQTTPFDIAKELSKILAANALISQVDGVLWDMNRSLESDCELKIFTFNSDEGRDTFWHSSAHILGQSLEMEYGCKLCIGPCTTRGELATSSSGFYYDAFYGDLGLNDDHFKKIEAGALKAVAEKQPFERIEVEIIKDLPEDKTITVYRCGPLVDLCRGPHIPNTSFVKAIACLKASSAYWRGNKDRESLQRVYGISYPDQKSLKEYLNMLEEAKKYDHRLLGTKQELFFCHPLSPGSWFFLPHGARIYNKLMEFIRTQYRDRGYEEILSPNMYNMQLWETSGHAANYKENMFVFEYGHYLKNVELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCSKSQIKDEVRGVLEFIKYIHNVFGFTFDLKLSTRPEKFLGDIATWEEAEAALTEALNEFGKPWLINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPKRFELYYSTEDEAKREMPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQSYALKVRDQIHHAGYYDDVDSTDRKIQKKVREAQLAQYNFILVVGEEEANTGQVSVRVRDKADHRVMSIESLLKHFEQENAAFH 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4535835 4541839 + BLOR00402 Blo01g00402 54842

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00402 695 CDD ThrRS_core 322 598 IPR033728 -
Blo01g00402 695 SMART tRNA_SAD_4 249 298 IPR012947 GO:0004812|GO:0005524|GO:0043039
Blo01g00402 695 Gene3D Bira Bifunctional Protein; Domain 2 405 591 IPR045864 -
Blo01g00402 695 Gene3D Bira Bifunctional Protein; Domain 2 304 404 IPR045864 -
Blo01g00402 695 PANTHER THREONINE-TRNA LIGASE 52 694 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Blo01g00402 695 Pfam Anticodon binding domain 600 688 IPR004154 -
Blo01g00402 695 CDD TGS_ThrRS 91 156 - -
Blo01g00402 695 Hamap Threonine--tRNA ligase [thrS]. 156 693 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Blo01g00402 695 SUPERFAMILY Class II aaRS and biotin synthetases 322 585 IPR045864 -
Blo01g00402 695 CDD ThrRS_anticodon 598 688 - -
Blo01g00402 695 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 249 298 IPR012947 GO:0004812|GO:0005524|GO:0043039
Blo01g00402 695 Gene3D - 155 303 - -
Blo01g00402 695 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 310 593 IPR006195 -
Blo01g00402 695 Pfam TGS domain 91 151 IPR004095 -
Blo01g00402 695 Gene3D - 219 262 - -
Blo01g00402 695 PANTHER THREONINE--TRNA LIGASE, CYTOPLASMIC 52 694 - -
Blo01g00402 695 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 403 588 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Blo01g00402 695 Gene3D - 592 695 IPR036621 -
Blo01g00402 695 PRINTS Threonyl-tRNA synthetase signature 566 579 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Blo01g00402 695 PRINTS Threonyl-tRNA synthetase signature 421 444 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Blo01g00402 695 PRINTS Threonyl-tRNA synthetase signature 593 605 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Blo01g00402 695 PRINTS Threonyl-tRNA synthetase signature 522 550 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Blo01g00402 695 ProSiteProfiles TGS domain profile. 85 151 IPR004095 -
Blo01g00402 695 SUPERFAMILY Class II aaRS ABD-related 586 689 - -
Blo01g00402 695 SUPERFAMILY TGS-like 91 152 IPR012676 -
Blo01g00402 695 SUPERFAMILY ThrRS/AlaRS common domain 152 320 IPR018163 GO:0000166
Blo01g00402 695 Gene3D - 90 150 IPR012675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00402 K01868 TARS, thrS; threonyl-tRNA synthetase [EC:6.1.1.3] - csv:101212232 1136.71
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g00402 Blo16g01152 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00402 Blo-Chr1:4535835 Blo13g00426 Blo-Chr13:24469218 6.41E-104 dispersed
Blo01g00402 Blo-Chr1:4535835 Blo16g01152 Blo-Chr16:40045815 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g751 Blo01g00402 Blo16g01152 Bda01g02229 Bda11g01256 Bpe13g01454 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01256 . . Bma01g00058 Bma06g00627 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003702 2 1 2 2 1 1 3 1 1 0 1 1 3 0 1 3 1 1 2 1 1 1 2 2 2 1 1 3 3 2 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00402 Blo_Chr01 FPKM 3.99766 5.007689 0.574438 0.195931 0.423193 0.525557 0.597396 0.0 0.0 0.0