Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00406 ATGGGGAATTGTCAAGCCATAGATGCAGCTTCACTGGAAGTAAAACATCCAGATGGGAGAATAGAGAGGTTATATTATCCCGTGACGGCGAGTGAAGTGATGAGGATGAATCAAGGTCACTACGTTACTCAGATTCTTCCGTTGTCTACCGTTGATTCTGATGACAAAGAAAACGACGGCCTTACCGCCACCGTCCGTTTCACTCGGGTGAAGCTCCTCAGACCTACCGATACTCTCTCTCTTGGCCATTCTTACAGGCTCGTTACCACCGAAGAGGTAATGAAGGTGATGAGGGCAAAGAAATACGCAAAAACGAAAAAACAGCAACGATCAGAAAAAGTTGAGCAGATTCAGTCAGAAAAGGCTCAGATTTCAAGTTCTGATCAAGCAAAAAGAGAGTCTCAGAAGACGACGTACGAGGGAAGGAGACATGAAGGAAGTGGAGCGAGGACAAAACCAGTGAATCCAAAATCATGGCGTCCATCGTTGAACAGCATCTCTGAGGGTGGAGTCGAATCATATTCCTAG 528 46.02 MGNCQAIDAASLEVKHPDGRIERLYYPVTASEVMRMNQGHYVTQILPLSTVDSDDKENDGLTATVRFTRVKLLRPTDTLSLGHSYRLVTTEEVMKVMRAKKYAKTKKQQRSEKVEQIQSEKAQISSSDQAKRESQKTTYEGRRHEGSGARTKPVNPKSWRPSLNSISEGGVESYS 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4579092 4579976 + BLOR00406 Blo01g00406 54846

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00406 175 Pfam PADRE domain 1 168 IPR025322 -
Blo01g00406 175 MobiDBLite consensus disorder prediction 157 175 - -
Blo01g00406 175 MobiDBLite consensus disorder prediction 118 132 - -
Blo01g00406 175 PANTHER D-RIBOSE-BINDING PERIPLASMIC PROTEIN 1 168 - -
Blo01g00406 175 MobiDBLite consensus disorder prediction 133 150 - -
Blo01g00406 175 MobiDBLite consensus disorder prediction 101 175 - -
Blo01g00406 175 PANTHER EXPRESSED PROTEIN 1 168 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00406 - - - twl:119999711 194.512
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00406 Blo-Chr1:4579092 Blo06g00866 Blo-Chr6:31927815 1.07E-55 dispersed
Blo01g00406 Blo-Chr1:4579092 Blo15g00279 Blo-Chr15:3024953 3.50E-37 wgd
Blo01g00406 Blo-Chr1:4579092 Blo16g01149 Blo-Chr16:40018974 6.31E-73 wgd
Blo01g00406 Blo-Chr1:4579092 Blo04g00743 Blo-Chr4:7004198 3.13E-21 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g781 Blo01g00406 . . . . . . . . . . . . . . . . Bhi07g01709 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018107 1 0 1 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00406 Blo_Chr01 FPKM 7.830488 9.352338 8.921966 10.156585 12.752645 13.122201 12.10467 9.699144 10.420041 10.130957