Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00407 ATGCCTGGGAACCGATCTAAACCGGAGAAGCAAGATGATGGGAATCATTATAGGCGGGATCCCTATGAAGTCCTCGGGGTTTTGAGGAACTCCACAGATCAGGAAATCAAGAGCGCTTACCGAAGAATGGCGCTCAAGTACCATCCTGACAAGAATGCAAATGATCCTAAAGCAGCTGATTTATTTAAGGAGGCTACATTTTCCTACAAAATTTTGTCCGATCCAGATAAACGTAGGCAGTATGACACAGCTGGCTTTCAGATACAGAAAATATATATGCCATATGTTAATTTCTTTTATTCCACTATCGTTGAAAAGCAATGCGCTCACTTTTATTCTGTTACAATAACAGAATCCGATGCACAAGGTGGACTTGTATGCCGAGTAGAATCATCTGATAAAAGCAAATTTAAGTTGCTGTATTTTGAACAAGAAGAGAACGGTGGATTAAGCCTTGCTCTGCAGGATGAAAGCATCAAAACAGGAAAAGTAACATCTGCTGGAATATTTTTTCTTGGTTTTCCTGTCTATCGATTTAACCAAACAATTAGTTCTATAGCTGCTGCAAAAGATCCTGATACCGCCTTTTTTAAACGGTTGGATGGGTTGCAGCCTTGTGAAATTACTGAACTGAAGGCAGGAACTCATTTCTTTGCCGTCTATGGTGACAACTTTTTCAAAAGTGTGAGCTACACAATAGAGGCGGTTTGTGCCACAGCATTTGCCAAGCAAAAGGATGATCTGAGGGCTGTGGAAGCTGAACTTTTGACGAAAAGGGTTGAAATATCGAAATTTGAATCTGAATACAGAGAGGTACTGGCACAATTTATGGAAATGACGAGTAGGTATGCACAAGAGAAGCGAGAGATTTTTCTCCGGGCGCTGCAGTTCAATCGCAGATTTGGAGACGAAGAGTTAGCCGTTTCTAGCTCAGAACATCATGCGCTCGGTGCTCTAGTCCTCGTGACCATACCGGTTGTGCGGAGGGGAAATGGTTTTCGATTCAGAAGCTTGGTTGTGAAGGCCGCTTTTGCTAATGAGGGTGGTTCTAGTCGAACTGGTACTTCTAGAAGAGTGTACAGAGAATCTCAAATGCAGAGCTCCTCGTTTATTTCTCCAGTGAAGCAGGTTGCCTCGTTTGTTGTTCCAGCAGGCGTGTTCGTTGCTGTTACTTTCATTATGTGGAAATTGGTGGAAAAACTCCTTGTACCAAGTCCACCGAAGACTTCTCCCACAGAAAATAAATCTTCCGAACAAGGAGTCAAGTGGTCATTTGCTGTTGGCACTAATTTGTTACCGAGTTTGACATCAAAAATCGACCGAGAATCTAAGCAAAAGCTCAATGATTTTGCCAAAGAACTCAGGACATTCAGCAGTGTTGATATGTCTGGTCGCAACTTTGGGGATGAAGGACTATTTTTCCTTGCTGAGAGTTTAGCATATAATCAGGTTGCCGAAGAAGTCAATTTTGCTGCAAATGGAATCACAGCAGAAGGGATAAAAGCTTTTGATCGTGTTCTTCTGTCAAATATTGTATTAAATAGTCTTAATCTTTCTGGAAATCCTATTGGAGATGAAGGAGTTAAGTGCCTGTGTAACATTTTGGTGGATAATACTGGTATTCAGAAGCTTCAACTGAACAGTACTGACTTAGGAGATGAGGGTGCAATAGCTATTGCGGAAGTATTGAAGAGAAATGCAAGCTTGCAAGTTCTTGAACTTAACAACAATTTGATTGATTATTCTGGATTTACGAGTCTTGCTGGAGCACTCCTCGAGAATACCACTTTACGCAATTTACATCTGAATGGAAATTATGGTGGTGCTTTGGGGGTCAATGCTTTGGCTAAAGGACTTGAAAACAACAAATCTTTGAGGCCGGGTTTACATCTTGAGGAAATTTTCATTTTTCTAATTTCTGTTCATGAAAAACAAGCTATGGAGCTTCATTTACATGGAAATTCTATTGGCGATGAAGGTGTGCGCGCTTTGGTCTCAAGTTTATCTTCACGCAAAGGGAGACTTACACTCCTTGACGTTGGGAACAACTCAATCACTGCAAAAGGTGCCTTCCATGTTGCTGAATATATTAAGAAGACAAAGAGCTTGTTATGGCTTAACATGTATATGAATGATATTGGTGACGAGGGGGCTGAGAAGATAGCCAATGCTTTAAAGCAAAATCGAACAATAACAAATATAGACCTGGGGGGCAATAACATTCGTGCCAAGGGAGTTAGTAATATTGCTCAAGCTTTAAAAGATAATTCTGTCATCACGACGTTGGACATTGCTTATAATCCAATTGGACCAGATGGAGCAAAAGATTTGTCAGACATTCTTAAATTTCACGGAAACGTACAAACCCTTAAGCTTGGTTGGTGCCAGATCGGACCAAAGGGTGCTGAGTTTATAGCTGATACATTGAAGTACAACACCACCATATCTATTTTGGACTTGCGGGCAAATGGACTCAGAGATGAAGGCGCAGCTTGCCTGGCTCGCAGCTTGAAAGTGGTTAATGAAGCTTTAACTTCCTTAGATTTAGGATTCAACGAAATAAGGGATGATGGCGCTTTTGCCATTGCTCAAGCACTAAAGGCGAATGGGGACGTGGCAGTCTCATCTCTTAACCTTGCCAGTAACTTCCTTACAAAATTTGGACAGGTTATATCAAATACAAAAGTTGAAAACCCAGAAGACCAGGTTCAATCATTATCCATCCCTCTTCCCACCACTTTCATAGTTTCTTGTTTAACCTATTATTTTGCTATCTTGACAGGCGAGGAATGGGCTTTACAGGAGACTACTACAATCTCTTGGTACTGA 2829 41.22 MPGNRSKPEKQDDGNHYRRDPYEVLGVLRNSTDQEIKSAYRRMALKYHPDKNANDPKAADLFKEATFSYKILSDPDKRRQYDTAGFQIQKIYMPYVNFFYSTIVEKQCAHFYSVTITESDAQGGLVCRVESSDKSKFKLLYFEQEENGGLSLALQDESIKTGKVTSAGIFFLGFPVYRFNQTISSIAAAKDPDTAFFKRLDGLQPCEITELKAGTHFFAVYGDNFFKSVSYTIEAVCATAFAKQKDDLRAVEAELLTKRVEISKFESEYREVLAQFMEMTSRYAQEKREIFLRALQFNRRFGDEELAVSSSEHHALGALVLVTIPVVRRGNGFRFRSLVVKAAFANEGGSSRTGTSRRVYRESQMQSSSFISPVKQVASFVVPAGVFVAVTFIMWKLVEKLLVPSPPKTSPTENKSSEQGVKWSFAVGTNLLPSLTSKIDRESKQKLNDFAKELRTFSSVDMSGRNFGDEGLFFLAESLAYNQVAEEVNFAANGITAEGIKAFDRVLLSNIVLNSLNLSGNPIGDEGVKCLCNILVDNTGIQKLQLNSTDLGDEGAIAIAEVLKRNASLQVLELNNNLIDYSGFTSLAGALLENTTLRNLHLNGNYGGALGVNALAKGLENNKSLRPGLHLEEIFIFLISVHEKQAMELHLHGNSIGDEGVRALVSSLSSRKGRLTLLDVGNNSITAKGAFHVAEYIKKTKSLLWLNMYMNDIGDEGAEKIANALKQNRTITNIDLGGNNIRAKGVSNIAQALKDNSVITTLDIAYNPIGPDGAKDLSDILKFHGNVQTLKLGWCQIGPKGAEFIADTLKYNTTISILDLRANGLRDEGAACLARSLKVVNEALTSLDLGFNEIRDDGAFAIAQALKANGDVAVSSLNLASNFLTKFGQVISNTKVENPEDQVQSLSIPLPTTFIVSCLTYYFAILTGEEWALQETTTISWY 942
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4594416 4606233 - BLOR00407 Blo01g00407 54847

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00407 942 PANTHER NACHT, LRR AND CARD DOMAINS-CONTAINING 429 631 - -
Blo01g00407 942 PANTHER NACHT, LRR AND CARD DOMAINS-CONTAINING 647 841 - -
Blo01g00407 942 PANTHER NACHT, LRR AND CARD DOMAINS-CONTAINING 845 903 - -
Blo01g00407 942 SMART dnaj_3 19 77 IPR001623 -
Blo01g00407 942 Gene3D DnaJ domain 4 95 IPR036869 -
Blo01g00407 942 SUPERFAMILY RNI-like 645 892 - -
Blo01g00407 942 SUPERFAMILY Chaperone J-domain 18 94 IPR036869 -
Blo01g00407 942 PRINTS DnaJ domain signature 57 77 IPR001623 -
Blo01g00407 942 PRINTS DnaJ domain signature 40 55 IPR001623 -
Blo01g00407 942 PRINTS DnaJ domain signature 22 40 IPR001623 -
Blo01g00407 942 Pfam DnaJ domain 20 82 IPR001623 -
Blo01g00407 942 Pfam Leucine Rich repeat 727 750 IPR001611 GO:0005515
Blo01g00407 942 Pfam Leucine Rich repeat 541 560 IPR001611 GO:0005515
Blo01g00407 942 Pfam Leucine Rich repeat 756 778 IPR001611 GO:0005515
Blo01g00407 942 Pfam Leucine Rich repeat 844 863 IPR001611 GO:0005515
Blo01g00407 942 Pfam Leucine Rich repeat 648 664 IPR001611 GO:0005515
Blo01g00407 942 Pfam Leucine Rich repeat 706 722 IPR001611 GO:0005515
Blo01g00407 942 Pfam Leucine Rich repeat 811 834 IPR001611 GO:0005515
Blo01g00407 942 Pfam Leucine Rich repeat 787 806 IPR001611 GO:0005515
Blo01g00407 942 Pfam Leucine Rich repeat 510 532 IPR001611 GO:0005515
Blo01g00407 942 CDD DnaJ 20 74 IPR001623 -
Blo01g00407 942 Gene3D Ribonuclease Inhibitor 594 783 IPR032675 -
Blo01g00407 942 ProSiteProfiles dnaJ domain profile. 20 85 IPR001623 -
Blo01g00407 942 SUPERFAMILY RNI-like 440 626 - -
Blo01g00407 942 MobiDBLite consensus disorder prediction 1 21 - -
Blo01g00407 942 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN 429 631 - -
Blo01g00407 942 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN 647 841 - -
Blo01g00407 942 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN 845 903 - -
Blo01g00407 942 Gene3D Ribonuclease Inhibitor 784 908 IPR032675 -
Blo01g00407 942 Gene3D Ribonuclease Inhibitor 434 593 IPR032675 -
Blo01g00407 942 SMART LRR_RI_2 728 755 - -
Blo01g00407 942 SMART LRR_RI_2 538 565 - -
Blo01g00407 942 SMART LRR_RI_2 841 868 - -
Blo01g00407 942 SMART LRR_RI_2 643 670 - -
Blo01g00407 942 SMART LRR_RI_2 812 839 - -
Blo01g00407 942 SMART LRR_RI_2 672 699 - -
Blo01g00407 942 SMART LRR_RI_2 784 811 - -
Blo01g00407 942 SMART LRR_RI_2 756 783 - -
Blo01g00407 942 SMART LRR_RI_2 594 621 - -
Blo01g00407 942 SMART LRR_RI_2 482 509 - -
Blo01g00407 942 SMART LRR_RI_2 566 593 - -
Blo01g00407 942 SMART LRR_RI_2 510 537 - -
Blo01g00407 942 SMART LRR_RI_2 700 727 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00407 K22614 NLRC3, NOD3; NLR family CARD domain-containing protein 3 - qsu:111993957 835.099
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g00407 Blo16g01146 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00407 Blo-Chr1:4594416 Blo01g00506 Blo-Chr1:5606478 1.35E-106 dispersed
Blo03g00533 Blo-Chr3:20121361 Blo01g00407 Blo-Chr1:4594416 2.47E-07 transposed
Blo01g00407 Blo-Chr1:4594416 Blo16g01146 Blo-Chr16:39990618 1.49E-159 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g787 Blo01g00407 Blo16g01146 Bda01g02237 . Bpe13g00480 . . . . Cmo18g01213 . Cma18g01231 . Car18g01100 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g00067 . . . . . . . . . Cpe07g00640 . . . . . . . . . . . . . . . Csa05g01687 Chy09g00629 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011878 1 3 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 0 1 1 1 1 0 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00407 Blo_Chr01 FPKM 17.359467 14.47899 25.187832 23.393545 29.588961 26.162666 33.34536 20.496374 21.53334 25.876514