Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00408 ATGGAAGGAGGAAACACACGCAAGCTAACCAGAAATGATGCTATAACATATCTTAAGGCTGTGAAGGAAACCTTGCACGACAACAAGCAAACATATGACGACTTCCTTAATGTTATGAAAGATTTTAAAGCTCGGAGTATTGCTCGTCGTCTTTGCATTTTCTTGTTTTCTTTGCCTGATCCGGTGGATCTATGGCTTACCATTTTGACATTGTTGTTCTTTGATTTCAAATCTATGGGTGAATCTGCTGTTGATGTTCTTAAAAATGAACATAAGATAGGGGAGACGCTTACCTCCAATCCGATAATGGAAGTCTCAGTTTCGTTTGGTAGGTTCGAGAATGACGAACTTTCTTGGGAAAAATGGTCGACTTTCTCGCCTAACAAATACTTGGAAGAAGTAGAGAAGTGTGCTACGCCTGGATCAGTAGCTCAGAAGAAGGCTTACTTCGAAGCTCATTATAAGAAGATAGCTGCTAGGAAAGCTGAGCTTCTGGAGCAGGAAAATCAAGTAGAAAACAACCAGTTGAAGCCATTTGATGAGATCGTTGAAGATCTGAAAAACACGAGTATCGAGAACTATCCAGAACTCGTTAAATCTAGGAATCAGAACTCTTCCGAAGAGATTAAGCAAGGAATCGCTTCGAATGATGAGGTGAATGAATTGAACGGTGACGAGGTGGAAGAGGAAGTTGATTGTAGATTAGAAAGTGAAATCCCATCGATTGAAGAAAAGAAAGAGGTGGATGTAAAATCCGAGTGTTCCAACACTAATCAATCAGAAGAACCTGTTGTGGAAAATGAAATCAAACCTCCTTCTCCAACCATTGAAGACCCTCCAAGCTGTTTGGACAGCGAGGAAACAAGAACGGCGCCGGAATCGAAAGAAAAAGCCATCAAATCAGAGAGTCGGAAGGAATCTGGAAAGATTACTCCTGCGAGCAAGGATAAACACAGTGGGATTGTAAAGAAGAAACCAGTTAAAACTGCATCAAAAGATTCCCTCATTACCCCAAGAATTTCCAAGGCTAATTCAACTTATACTACGCCTAAAACAAGATCTTCGACGAAGAACAGCATCGGATCATCATTATCAAGGAGCAAAATTCCTTCTGATGGACTGGGAAGAAAAGTTGCTCCTAAATCTATACACATGTCTCTCAGCTTGGGATCCCCAAATTCTCATCCAGTTTCTCTCAACCCAGATAGGAAATCTCTCATCATGGAGAAAATGGGTGATAAGGAGATCGTCAAAAGAGCATTCAAGGCATTCCAGAGCAGTTTCAATCAAATAAAATCCTCACCTGAAAACAGATCCTCTGTTGCAAAGCAGCAGGTACCCGCTAAAGAAACAGAAGGAAGAGTCTCTACTTCTATCAATGCCCGCAAAGAGAATGGAGGGTCTGTGAAAATAGTTGGTGTTGACAAGAGAATCACCAAGAGTGTTGCAACTTCTCCTGGCTTGAAAATTAACGAAAAGATCGATAAGCAAAGAGAGGTCCGTCCCAAAGACTCGGAAAGAACACGATTACAGTCGAAAGCAAAGGATCGTAAGGATGCCGAGATTAAAAAGCTGAGGCAAAGCCTTAATTTCAAAGCGACTCCGATGCCGGCCTTTTATCGAACGCAAAAATTGTCGAAAAGCACATCAGATAAGAATGTGATCGATGGAGGACTGAAGTGTGATAGGAAAACACCGACGATGAGCGGCCGACAAGTGCAGATAACTTGGATTCTGATCGACAATGGCGGTAAGAGAAGATCAAAGAAGAGCAGCATCGTAGAAGATGAGGTGAGAAGCGAAATGGATGGAGAGTATTGTTCTCTTACTGGTTTCAAAAAGCTTAAATAG 1851 41.65 MEGGNTRKLTRNDAITYLKAVKETLHDNKQTYDDFLNVMKDFKARSIARRLCIFLFSLPDPVDLWLTILTLLFFDFKSMGESAVDVLKNEHKIGETLTSNPIMEVSVSFGRFENDELSWEKWSTFSPNKYLEEVEKCATPGSVAQKKAYFEAHYKKIAARKAELLEQENQVENNQLKPFDEIVEDLKNTSIENYPELVKSRNQNSSEEIKQGIASNDEVNELNGDEVEEEVDCRLESEIPSIEEKKEVDVKSECSNTNQSEEPVVENEIKPPSPTIEDPPSCLDSEETRTAPESKEKAIKSESRKESGKITPASKDKHSGIVKKKPVKTASKDSLITPRISKANSTYTTPKTRSSTKNSIGSSLSRSKIPSDGLGRKVAPKSIHMSLSLGSPNSHPVSLNPDRKSLIMEKMGDKEIVKRAFKAFQSSFNQIKSSPENRSSVAKQQVPAKETEGRVSTSINARKENGGSVKIVGVDKRITKSVATSPGLKINEKIDKQREVRPKDSERTRLQSKAKDRKDAEIKKLRQSLNFKATPMPAFYRTQKLSKSTSDKNVIDGGLKCDRKTPTMSGRQVQITWILIDNGGKRRSKKSSIVEDEVRSEMDGEYCSLTGFKKLK 616
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4618567 4628116 - BLOR00408 Blo01g00408 54848

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00408 616 Pfam Targeting protein for Xklp2 (TPX2) domain 503 548 IPR027329 -
Blo01g00408 616 Gene3D Paired amphipathic helix 4 51 IPR036600 GO:0006355
Blo01g00408 616 MobiDBLite consensus disorder prediction 491 518 - -
Blo01g00408 616 MobiDBLite consensus disorder prediction 282 320 - -
Blo01g00408 616 PANTHER F3I6.9 PROTEIN 79 552 - -
Blo01g00408 616 MobiDBLite consensus disorder prediction 199 218 - -
Blo01g00408 616 MobiDBLite consensus disorder prediction 386 400 - -
Blo01g00408 616 PANTHER F3I6.9 PROTEIN 79 552 - -
Blo01g00408 616 MobiDBLite consensus disorder prediction 334 369 - -
Blo01g00408 616 MobiDBLite consensus disorder prediction 234 252 - -
Blo01g00408 616 MobiDBLite consensus disorder prediction 199 402 - -
Blo01g00408 616 MobiDBLite consensus disorder prediction 489 518 - -
Blo01g00408 616 Coils Coil 154 175 - -
Blo01g00408 616 SUPERFAMILY PAH2 domain 6 55 IPR036600 GO:0006355
Blo01g00408 616 MobiDBLite consensus disorder prediction 429 456 - -
Blo01g00408 616 ProSiteProfiles PAH domain profile. 7 75 IPR003822 GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00408 - - - zju:107428763 394.43
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g00408 Blo06g00860 CCT
Blo01g00408 Blo16g01145 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00408 Blo-Chr1:4618567 Blo16g01145 Blo-Chr16:39966361 1.28E-127 dispersed
Blo11g00637 Blo-Chr11:6599402 Blo01g00408 Blo-Chr1:4618567 2.56E-17 transposed
Blo01g00408 Blo-Chr1:4618567 Blo16g01142 Blo-Chr16:39937331 3.12E-14 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g796 Blo01g00408 Blo16g01145 Bda01g02240 Bda11g01248 Bpe13g00476 . . . Cmo04g01677 . . . . . Sed06g1595 . Cpe01g01417 Bhi07g01660 Tan04g1166 Cmetu10g1704 . . . . Cla05g02506 Cam05g2690 Cec05g2723 Cco05g2758 Clacu05g2693 Cmu05g2547 Cre05g2662 . . . Cone12ag0619 Lsi04g00505 Csa05g02378 Chy10g00943 Cme10g00484 Blo06g00860 . . Bda11g01248 . . Bma01g00070 . . . . Cma04g01602 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003701 3 7 3 2 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00408 Blo_Chr01 FPKM 4.983908 0.0 7.753342 9.876033 5.692728 2.473611 6.939106 6.386846 8.853425 12.646123