Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00409 ATGTCTGTTTCTCGACGGTTATCGGTCAGTCCTCCACATTCTGATGTGGCGTCGACTCACGAATTTAAGCACAGAGTCATCAACTGCCTCAATAAACTCGGCGATCGCGATACTCTTGCTGTCGCTGCCAGTGAGCTCGAGTCTATTGCTAAAACTTTGACGTATGATTTCTTCCCGGCTTTTCTCTCTTGTATTCATAACACTGATGCTACTTCGAAGTCGCCGGTGCGTAAACAATGTGTGAACCTATTGACTGTTCTTTCTCACTCTCATGGCGATGCGTTATCTCCTTTCTTATGTAAGATGATCTCGACTGTTGTTCGTCGCCTCCGTGATCCTAACTCTGCCGTGAGATCTGCCTGCGTCGACGCTTCGGCGGCCATGTCCTCGCAAATCATGACGCCTTCATTTTCCTATTTTTTAAAGCCGTTTATGGAAACGCTTACGCTTGAGCAGGACATCAACTCTCAGATCGGTTCCGCGCTGTGCCTCTCTGCGGCGGTGGAGGCTGCGCCGGATCCGGAGGTTATGCAGTTGCAGAAGTGCTTGCCGAGGCTTGGAAAATTGGCGAGGAGCGACGGGTTCAAAGCTAAAGCGGCGCTGTTAGTTCTTATCGGAAGTATTGTTGGAGTTGGTGGCGCGTCCAGCCAGACCATCTTGGACTGGTTGATACCTTGCGTGGTGGAGTCTTTGGGCAGTGATGATTGGGCTGTAAGGAAAGCGGCGGCTGAGACACTTGGGAGGGTGGCTTTGGCGGAGAGAGACTTGGCGGCTGAATATAAATCAGCGTGCATTAGTTCTTTGGAGAGTCGGAGATTTGACAAGATAAAGGTTGTCCGGGAGACTATGAATCAAACCTTGGATTTGTGGCGAGAGATTTCTAATGTTCACGACGAGGTCTACGCAGCATCTCCACACAAATCTCCTTCAACAGATGGTGGTGGTAAAAGCGGTGGATGCTTTCCTCATGTCTCCAAAACTTGTCATGATATCAGTTTGAAAACTCCAGCAAAGAAAAATGTGCCCACAAATAAGCTCCCGCCATTAGCTACTACCCTGGTGACTACTACAAAAAAAGGTAGAGCTTTGAAGGGCAGTGAGTGCAACTCAAGCAAATACATGACTTCTAAGCTGGATCACAAGAGGTTTTCTGAGTCGAAATTTGAAAATGCAGAATCAAACTCGCCTTTTTCCAATGTGACTTTGGCAGAGGATATGAAAATGAGTAGCTGTGGAGATTTGGATTTTAGAGAGGTTAGGGATGGTGGAAATTCCTTTGTGGAAGTAAAACCTCTCCTTTTTAATCATCCCCGTGATGAAAAAGTTAATAAATTTAGGGGTTGTTCCCGCGTAGTTCCATACACGGGCAGTGAGGACCAAAACCCAGATGCTCTTGTTAGCAGCGGAGCTGATGAGTCTTTTGAGAACCAGAAAGATGTTGAGGATCTCTCTTTGATTCGTGATCAACTTCTACACATCGAAAATCAGCAATCCAATCTTCTAGACCTCCTGCAGCAGAGATTCATTGGGAGCTCGCAAAATGGAATGAATTCTCTAGAGACGCGAGTGCATGGACTAGAGATGGCATTGGATGAAATATCTTATGACTTGGCTGTATCAAATGGAAGGATAACAAACAGCGATGTCGCATGTTGCAAGCTGCCAGGCACAGAATTTCTTAGTTCCAAATTCTGGAAGAGAACGGAAGGAAGGTATTTTGGCTCAAAGTTTTATTCTACTGGCAACGAACAACCACCAAATTGTCTTCATCCCATGGCGGATAAAGACGCTAAAGTGGAACCAAATATGCCAGAAAGCAGAAAGTTTCATTGTCGTAGTGAGAACAAGCTAGTCGTAAATCAATTGGCAGATGTCCAGGGCAACTCCAATGAAAATTTAGAGCGCCATTCAATGGGAATGCAGAAGATAACAGTCAAAGAAAATGAGGTTGTAAAAGGTGGCAATGGCGTGGCCGTCATAGGGCATTACCAACTACATTAA 2001 45.93 MSVSRRLSVSPPHSDVASTHEFKHRVINCLNKLGDRDTLAVAASELESIAKTLTYDFFPAFLSCIHNTDATSKSPVRKQCVNLLTVLSHSHGDALSPFLCKMISTVVRRLRDPNSAVRSACVDASAAMSSQIMTPSFSYFLKPFMETLTLEQDINSQIGSALCLSAAVEAAPDPEVMQLQKCLPRLGKLARSDGFKAKAALLVLIGSIVGVGGASSQTILDWLIPCVVESLGSDDWAVRKAAAETLGRVALAERDLAAEYKSACISSLESRRFDKIKVVRETMNQTLDLWREISNVHDEVYAASPHKSPSTDGGGKSGGCFPHVSKTCHDISLKTPAKKNVPTNKLPPLATTLVTTTKKGRALKGSECNSSKYMTSKLDHKRFSESKFENAESNSPFSNVTLAEDMKMSSCGDLDFREVRDGGNSFVEVKPLLFNHPRDEKVNKFRGCSRVVPYTGSEDQNPDALVSSGADESFENQKDVEDLSLIRDQLLHIENQQSNLLDLLQQRFIGSSQNGMNSLETRVHGLEMALDEISYDLAVSNGRITNSDVACCKLPGTEFLSSKFWKRTEGRYFGSKFYSTGNEQPPNCLHPMADKDAKVEPNMPESRKFHCRSENKLVVNQLADVQGNSNENLERHSMGMQKITVKENEVVKGGNGVAVIGHYQLH 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4636936 4639749 + BLOR00409 Blo01g00409 54849

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00409 666 ProSiteProfiles HEAT repeat profile. 223 261 IPR021133 -
Blo01g00409 666 SUPERFAMILY ARM repeat 40 290 IPR016024 -
Blo01g00409 666 Gene3D - 21 369 IPR011989 -
Blo01g00409 666 Pfam HEAT repeat 223 250 IPR000357 GO:0005515
Blo01g00409 666 PANTHER MICROTUBULE-ASSOCIATED PROTEIN TORTIFOLIA1 7 649 IPR033337 GO:0005874|GO:0008017
Blo01g00409 666 PANTHER TORTIFOLIA1-LIKE PROTEIN 4 7 649 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00409 - - - qsu:111996814 691.034
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g00409 Blo16g01141 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00409 Blo-Chr1:4636936 Blo03g01445 Blo-Chr3:41024080 6.79E-08 dispersed
Blo01g00409 Blo-Chr1:4636936 Blo15g00284 Blo-Chr15:3101654 1.01E-160 wgd
Blo01g00409 Blo-Chr1:4636936 Blo16g01141 Blo-Chr16:39920205 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g803 Blo01g00409 Blo16g01141 Bda01g02242 . Bpe13g00475 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g00072 . . . . . . . . . Cpe07g00613 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005532 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00409 Blo_Chr01 FPKM 16.625338 17.501921 79.498466 87.256638 24.787102 22.024439 24.886263 121.935455 119.777321 125.333443