Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00412 ATGGATCCCCCTTCATTGATCAATGAAGAACCGTATTCTGACCCAAATGCAGCACCATACAATCTGGCTGAGATCTGGCAGTTTCAGATGAACGGCGATGCAGTTATTTCCGAATCCGGATTGGGCGAGAGGAGGGCTCAGTTCGTCCCCAATTTAGGGCAATTGGGGGAAGTTTCTGCCGTGAATCACGGACTCTCGGCCAATGCTTCAACGAGAAAAGCACAAAATGGTACGATGAAGCGACAGACTGCGGAAGATGACTCCCCCACAGGTCTCCCAGTCAGCAATGGCGCAGCAAACGATAATAAGAAACGCAATAAAACAGGAGCAAGCAGGGAGGTGAATAGCGAACCAAAAACTGGAGGAGAGCTGCAAAATTCCCAGACGCCTAAGCAGGACTACGTCCACGTTCGAGCAAGAAGAGGCCAAGCTACAGACAGCCATAGCTTAGCTGAAAGGGCCAGAAGAGAGAAGATAAGCGAGAGAATGAAAATTCTGCAGGATTTGGTTCCAGGCTGCAACAGGGTAATCGGAAAAGCTTTGGTGCTTGACGAGATAATCAACTACATTCAATCGTTGCAGTGCCAAGTCGAGTTCTTGTCTATGAAGCTTGAAGCAGTTACTTCAAGAATGAGCCCTGGGATTGAAGTGTTTCCTCCTAAAGATTACGGCGAGCAGGCATTCGAAAGCAATAGCATAGCATTTGGCTCACAAGCCACGAGAGAGTTCAGGCTCGGTTCGCCGCCTGAGTGGCTGCATATGCAGGTCGGCGGAGCTTTTGAAAGAACAACATAG 795 49.06 MDPPSLINEEPYSDPNAAPYNLAEIWQFQMNGDAVISESGLGERRAQFVPNLGQLGEVSAVNHGLSANASTRKAQNGTMKRQTAEDDSPTGLPVSNGAANDNKKRNKTGASREVNSEPKTGGELQNSQTPKQDYVHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNRVIGKALVLDEIINYIQSLQCQVEFLSMKLEAVTSRMSPGIEVFPPKDYGEQAFESNSIAFGSQATREFRLGSPPEWLHMQVGGAFERTT 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4665092 4666506 - BLOR00412 Blo01g00412 54852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00412 264 Coils Coil 190 210 - -
Blo01g00412 264 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 141 210 IPR036638 GO:0046983
Blo01g00412 264 MobiDBLite consensus disorder prediction 113 131 - -
Blo01g00412 264 MobiDBLite consensus disorder prediction 66 131 - -
Blo01g00412 264 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 264 IPR024097 GO:0006355
Blo01g00412 264 MobiDBLite consensus disorder prediction 66 104 - -
Blo01g00412 264 Gene3D - 140 213 IPR036638 GO:0046983
Blo01g00412 264 Pfam Helix-loop-helix DNA-binding domain 147 194 IPR011598 GO:0046983
Blo01g00412 264 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 143 193 IPR011598 GO:0046983
Blo01g00412 264 PANTHER BNAC05G07950D PROTEIN 1 264 - -
Blo01g00412 264 CDD bHLH_AtBPE_like 133 218 - -
Blo01g00412 264 SMART finulus 149 199 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo01g00412 Blo11g00894 CCT
Blo01g00412 Blo11g00894 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00412 Blo-Chr1:4665092 Blo06g00398 Blo-Chr6:23064680 7.97E-44 dispersed
Blo11g00894 Blo-Chr11:17912638 Blo01g00412 Blo-Chr1:4665092 2.13E-64 transposed
Blo01g00412 Blo-Chr1:4665092 Blo13g00032 Blo-Chr13:522851 6.24E-76 wgd
Blo01g00412 Blo-Chr1:4665092 Blo15g00288 Blo-Chr15:3173837 4.15E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11837 PF00010 HLH 3.70E-08 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00412 - - csv:101209222 302.367