Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00413 ATGGAGTCATCCACGTACTCCACGCTTTCGAGAGGATCATTCTCGTCGAGCATAGGCAACTCTGCAGAACTCGAGGGAAATCTCACGCTCAGTGATAGGTTAAAAGTATTCAAGACTTCCCAATTCGATCCAGATTCTTACGTTTCCTCCAAATGCCGCACCATGAACGAGAAGTCTCTAGGTTGGACGTATTTGATGGAAATCAGACATTTATGCTCCTATCTTGTTGATTTGAAGAAAGCTTCTGCAGAAGAAATGCGCAAAAGTGTTTATGCTAATTATGCAGCTTTCATTCGAACTTCTAAGGAAATTTCTGATCTGGAAAGGCAGCTTCTTTCCATGAGAAATCTCCTATCTACTCAAGCAGCTCTAGTTCATGGTTTAGCTGAAGGAGTTCATGCTGATTCACTCTCGTCCGGTCCCGACGATTCAAATTCAGAAGACATATCGAAAGAAACAAAGGATCTTTCCCATATACAAGATTGGTTGGTGGAATTTCTAGACACCCTTGAAGTTTTATTGGCAGAAAGAAGAGTAGACGAAGCTTTAGCTGCTTTAGACGAAGGAGAAAACATAGTAGCAGAAGCTAATGACAGAAAAACATTGAATCCCTCCGCATATTCTTCTCTACAAACTGCCATAACTGAACAAAGGCAAAAACTGGCTGACTTGCTTGCAGAAATCACTTGCCAACCTTCCACTCGTGGGGTAGAGCTTCGTTCCGCCATTGGAGCTCTGAAAAAACTTGGGGATGGTCCTAGAGCTCATACTTTGCTGCTTAATTCTCATCAGGAAAAACTGCAGCATAGTTTGCAGAGTTTTCGCTCTTCGAGCACATTGGGTGGAGTAGCCTACACATCTGCCATTTCACAAAATGTCTTCTCAACCATTGCACAGGCAGTAAGTGATTCCTTGGCCGTTTTTAGCGACGAGCCGGCTTATGCTTCCGAGCTCGTAACCTGGGCTGTTAATCAGACCGAGACATTTTCTCGTTTCCTTAAAAGACAAGTCATTGCTTCTTCGGCAGCTGCCGGAGGACTTAGAGTGGCAACCGAATGTGTTCATATATGCTTAGGCTACTCCTCTTTGTTAGAAGCTCATGGGCTGGCTCTTTCTCCTGTGGTGTTAAGACACTTCCGGCCCTGTATCGAACAAGCTCTGAATGCGAATCTAAGGCGAATCGAACAAACCAGTGCTGCCTTTGCCGCTGCCGATGATTGGTCATTGAGTTATTCGCCGATCAGTGCTCGTCTGATGAGTGTTTCTTCAACCACATCTCTGAGTAGTAGTATGAATGCTTTCCAGCCAAAGCTTTCAAGCAGTGCTCATAGATTCAATACAATGATTCAAGAACTTCTTGAGGATGTGGAGCCTCTTGAGAGCCTTCATTTGAATGGTCTAATCTTGGAAGGTGTCTTACAAGTATTCAACTCCTACATCAACTTGTTAATCAACGCTTTGCCAGGTTCGATAGAAAACGAGGAAGGCTTAGAAGGGTCGGGAAATAAGATCGTTAACATGGCCGAAACCGAAGCGCAACAAGTAGCTTTACTATCGAATGCATCTCTATTATCAGACGAGCTTCTTCCTCGGGCTGCAATGAAGCTTTTTCAGTTTCAATCGGCCAATCAGTTCGAGACACCAAAGCGGAGTTCCGATAAGCAAAGTCGCTTTCCGGAACAAAGGGAGTGGAAGAGGCGATTACAACGGTCGGTCGATCATTTAAAGGATAGCTTCTGCAGACAACATGCTCTTGAACTTATCTTCACAGATGATGGAGATAGCCGTCTGACTGCTCAAATATACCTTTCAATAGATAACCATTTTGAGGAGCCTGAATGGTTTCCATCACCAGTTTTTCAGGAACTTTTTTCGAAACTGACCCGAATTGCAAGCATTTCGACGGATATGTTCGTCGGCCGAGAGAGATTTGCAACTGTCCTTCTAATGAGACTTATTGAGACTGTAATATTGTGGCTCTCAAATGATCAAACCTTTTGGGAGCAAATTGAGGAAGGAGACAAGCCTTTAGGCCATTTTGGCCTTCAACAATTGTATTTGGATTTGGAGTTTGTGATTATATTTTCGTCGCAAGGCCGATATCTCTCGAGAAATCTCCATCAAGTCATTAAGAACATCATCGGTAGAGCTATCGACTCCGTTGCCGCATCCGGGACCGATCCATACAGTGTTTTGCCAGATGATGAATGGTTTGCTGAAGTTGCTCAAATAGCAATAAAGATGCTGAGTGGGAAAGCCAAATTTGGAAATGTAGAGAGAGAAGCTAGCAGCCCCACTGCATCTGTGTCAGCAAAATCTATGTCCTCTGTCCATTCTCACGGAAGCAACTAG 2352 43.96 MESSTYSTLSRGSFSSSIGNSAELEGNLTLSDRLKVFKTSQFDPDSYVSSKCRTMNEKSLGWTYLMEIRHLCSYLVDLKKASAEEMRKSVYANYAAFIRTSKEISDLERQLLSMRNLLSTQAALVHGLAEGVHADSLSSGPDDSNSEDISKETKDLSHIQDWLVEFLDTLEVLLAERRVDEALAALDEGENIVAEANDRKTLNPSAYSSLQTAITEQRQKLADLLAEITCQPSTRGVELRSAIGALKKLGDGPRAHTLLLNSHQEKLQHSLQSFRSSSTLGGVAYTSAISQNVFSTIAQAVSDSLAVFSDEPAYASELVTWAVNQTETFSRFLKRQVIASSAAAGGLRVATECVHICLGYSSLLEAHGLALSPVVLRHFRPCIEQALNANLRRIEQTSAAFAAADDWSLSYSPISARLMSVSSTTSLSSSMNAFQPKLSSSAHRFNTMIQELLEDVEPLESLHLNGLILEGVLQVFNSYINLLINALPGSIENEEGLEGSGNKIVNMAETEAQQVALLSNASLLSDELLPRAAMKLFQFQSANQFETPKRSSDKQSRFPEQREWKRRLQRSVDHLKDSFCRQHALELIFTDDGDSRLTAQIYLSIDNHFEEPEWFPSPVFQELFSKLTRIASISTDMFVGRERFATVLLMRLIETVILWLSNDQTFWEQIEEGDKPLGHFGLQQLYLDLEFVIIFSSQGRYLSRNLHQVIKNIIGRAIDSVAASGTDPYSVLPDDEWFAEVAQIAIKMLSGKAKFGNVEREASSPTASVSAKSMSSVHSHGSN 783
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4671433 4674435 - BLOR00413 Blo01g00413 54853

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00413 783 Pfam Exocyst component 84 C-terminal 162 370 IPR032403 -
Blo01g00413 783 MobiDBLite consensus disorder prediction 763 783 - -
Blo01g00413 783 SUPERFAMILY Cullin repeat-like 154 387 IPR016159 -
Blo01g00413 783 PANTHER EXOCYST COMPLEX COMPONENT 8 10 779 IPR033961 GO:0000145|GO:0006887
Blo01g00413 783 Gene3D - 143 272 IPR042561 -
Blo01g00413 783 Coils Coil 207 227 - -
Blo01g00413 783 Gene3D - 282 385 IPR042560 -
Blo01g00413 783 PANTHER EXOCYST COMPLEX COMPONENT EXO84A 10 779 - -
Blo01g00413 783 Coils Coil 179 199 - -
Blo01g00413 783 Pfam Vps51/Vps67 37 123 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00413 K19986 EXOC8, SEC84; exocyst complex component 8 - qsu:111983108 1056.2
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00413 Blo-Chr1:4671433 Blo06g00768 Blo-Chr6:30982816 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g821 Blo01g00413 . . . Bpe13g00470 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag1384 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002109 2 2 2 1 1 2 3 2 2 2 2 2 3 2 3 3 2 2 3 2 2 2 2 2 2 2 2 3 2 2 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00413 Blo_Chr01 FPKM 0.0 0.0 102.544464 110.556763 123.605377 101.074387 114.893333 6.360526 6.719543 7.123932