Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00417 ATGGTCTCACTTGTTATCTGTTCCCCTTTGTCTACATCGAAAATACACAGAATGGGACAAGCACTGGGTTGTATTCAAGTAGACCAGTCAAATGTAGCAATTAAAGAAACATTCGGGAAGTTTGATGATGTGCTTCAACCCGGATGTCACTGCGTGCCTTGGTATTGTGGAAGCCAGTTAGCAGGTCACCTATCTTTACGTGTGCAACAACTTGATGTCCGCTGTGAAACAAAAACAAAGGATAATGTTTTTGTTACTGTGGTTGCTTCAATTCAATATCGACCCTTACCAGAGAGGGCAGTAGATGCTTACTATAAGCTCAGCAACACGAGAGAACAGATCCAAGCCTATGTTTTTGATGTTATTAGAGCAAGCGTGCCGAAGTTAGATTTGGATTCAACTTTTGAACAGAAAAATGATATAGCTAAAGCTGTGGAAGATGAACTCGAAAAGGCTATGTCAGCTTATGGGTTTGAGATAGTTCAGACTCTAATTGTTGACATTGAGCCAGATGAGCGTGTGAAGAGAGCAATGAATGAAATAAACGCCGCTGCTAGACTGAGGGTCGCAGCAACTGAGAAAGCCGAAGCTGAGAAAATATTACAAATCAAGAGAGCAGAAGGAGATGCAGAGTCCAAATATCTTGCCGGCCTTGGCGTTGCCAGACAGCGTCAAGCCATCGTCGACGGGCTGAGAGACAGCGTTCTCGCCTTTTCTCACAACGTTCCTGGAACGTCGGCCAAAGACGTGATGGACATGGTTTTGGTGACCCAATATTTCGACACCATGAAGGAAATCGGGGCGTCGTCGAAATCCAACTCTGTTTTCATCCCGCATGGACCTGGAGCTGTGAGAGACATTGCTTCACAGATTAGAGATGGTCTTCTCCAAGCAAATGACAACGACAACAACTAA 915 44.59 MVSLVICSPLSTSKIHRMGQALGCIQVDQSNVAIKETFGKFDDVLQPGCHCVPWYCGSQLAGHLSLRVQQLDVRCETKTKDNVFVTVVASIQYRPLPERAVDAYYKLSNTREQIQAYVFDVIRASVPKLDLDSTFEQKNDIAKAVEDELEKAMSAYGFEIVQTLIVDIEPDERVKRAMNEINAAARLRVAATEKAEAEKILQIKRAEGDAESKYLAGLGVARQRQAIVDGLRDSVLAFSHNVPGTSAKDVMDMVLVTQYFDTMKEIGASSKSNSVFIPHGPGAVRDIASQIRDGLLQANDNDNN 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4710709 4712032 + BLOR00417 Blo01g00417 54857

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00417 304 PANTHER HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 2 18 300 - -
Blo01g00417 304 CDD SPFH_like_u4 27 295 - -
Blo01g00417 304 Pfam SPFH domain / Band 7 family 26 199 IPR001107 -
Blo01g00417 304 Gene3D Band 7 domain 59 184 IPR036013 -
Blo01g00417 304 SUPERFAMILY Band 7/SPFH domain 63 188 IPR036013 -
Blo01g00417 304 SMART PHB_4 22 182 IPR001107 -
Blo01g00417 304 PANTHER STOMATIN-LIKE PROTEIN 2, MITOCHONDRIAL 18 300 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00417 - - - csv:101206629 512.301
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g00417 Blo16g01133 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00417 Blo-Chr1:4710709 Blo06g01096 Blo-Chr6:34264258 2.85E-125 dispersed
Blo01g00417 Blo-Chr1:4710709 Blo13g00022 Blo-Chr13:335697 2.14E-164 wgd
Blo01g00417 Blo-Chr1:4710709 Blo15g00304 Blo-Chr15:3425984 1.10E-178 wgd
Blo01g00417 Blo-Chr1:4710709 Blo16g01133 Blo-Chr16:39845973 3.48E-136 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g852 Blo01g00417 Blo16g01133 Bda01g02253 . Bpe13g00465 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0972 . . . . . . . . . . . . Bma01g00082 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000975 3 4 3 4 3 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 3 2 3 2 2 2 8 6 2 84
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00417 Blo_Chr01 FPKM 0.189269 0.193036 7.08502 8.145195 24.58156 26.065163 24.541002 3.024091 2.856874 2.458471