Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Blo01g00418 | ATGATGTCGGTTTTGTTGCTGTTGGGAGTGGTGGCCCACGCCCACATCGGAGAGTTTGATGAATACTGGAAACAAAGAGAAGAGGAAGCCAAGGTGGCGGCGCTGGACGCTTATGATCCTAATCCTGAGGCCGTCGCTGATAGCTTTAACGCTCAAGTTGGCAAAGCAATTGCAGGTACAAACACCACAAGAAGGAACCTGAAGAAGATGAGAGGTCCATGCAGGGCGACGAATCCCATCGACAGGTGCTGGAGGTGCGACCCTAACTGGGCCAATAACAGGAAGAAGCTAGCCACCTGCGTCCTGGGCTTCGGTCACAAGACCATCGGAGGACAATACGGCCGATTCTACGTCGTTACTGACGCCTCCGACTCCGACCTTATTAACCCTAAACTAGGCACTCTTCGCCACGCAGTGATTCAGAAGGAACCCCTCTGGATCATCTTCTCCCGGAGCATGGTTATCCGCCTAACCCAAGAGCTGATGGTGGCCAGCCACAAAACCATCGACGCTCGAGGAGCCGACGTTCATATCGCGTTCGGAGCCGGAATTACTGTCCAGTTTGTGACGAATGTGATCATCCATGGCCTCCATATCCACGACATTGTTTCCGGCACTGGCGGACTGATCAGGGATTCCGTCGACCACTATGGGTTTAGAACTAAGAGCGACGGGGATGGAATCTCGATCTTCGGATCTTCAAATGTTTGGATCGACCACGTTTCTATGTCCAACTGCCAAGATGGACTGATCGACGCTATTATGGGGTCCACTGGTATAACCATCTCGAACTGCCACTTCACCCACCATAACGAGGTGATGTTGTTCGGAGCAAGCGACAGCTATTCCGGCGATTCAATAATGCAAGTGACGGTAGCTTTCAACCATTTCGGAAGAGGATTGGTGCAGAGAATGCCAAGGTGCAGATGGGGTTTCGTCCACGTCGTTAACAACGACTACACCCACTGGCTCATGTACGCCATTGGAGGCAGCCAACACCCCACCATTGTTAGCCAAGGCAATCGCTTCATCGCTCCTCACAACGCAGCTGCTAAAGAGGTGACGAAGAGGGATTACGCTCCGCCGGAGGTGTGGAAAAGTTGGACATGGAGATCGGAGGGAGATCTACTGTTGAACGGAGCATTCTTCGTTAGATCAGGAGATCAAACCAAGAGAAGGCCATATCAGAGGCTGGACATGATCTCCTACAAGCCTGGAACCTTCGTTTCCCGACTAACTCGCTTCTCCGGCGCACTCAGAGAGAGAGAGATGGAAGCCCCCGTGTCTAAATCGGAGCTTTGCCGGAGTGGAAGAAATTATTGTGTTGTGGCGGATAGTGAGCCGGGGCCTAACGGGCGAGTAAAGAGACGTAGAAGAGATTCCTCTTCTATCGCAACTGGTTGTGGTGGTCAACCTTTTGATCAGCTGCTACAGAACCCATCTGAGATTGATCAATCCACTACCATTTCTGCACCAAAAAGAAGCTCCAGATTTCGCGGAGTCAGCAGACATAGAGGAACTGGGAGATACGAAGCTCATTTATGGGATAAAGGGTCTTGGAATCCAACTCAAAAGAAGAAGGGAAAGCAAGGAGCTCACGATGAAGAAGAATCAGCAGCAAGAGCATATGATTTAGCTGCTCTTAAGTACTGGGGAGCATCGTCTTTCACCAACTTTCCTATTTCTGATTATGAGAAAGAAATTGAGATTATGGTGAGAGTATCGAAAGAAGAATACTTGGCCTCTTTAAGAAGAAGGAGTAGTGGTTTTTCCAGAGGTGTATCCAAGTATAGAGGAGTTGCAAGGCACCATCACAATGGGAGATGGGAGGCAAGAATAGGAAGAGTGTTTGGAAACAAGTATCTCTATCTCGGCACTTACAGTACTCAAGAGGAAGCTGCTCGAGCTTACGATATAGCTGCAATTGAGTACAGAGGAATCAATGCAATGACCAACTTTGATTTAAGCACATACATAAGATGGCTTAAACCCGAGGCTAATCTTCTTCCGCCACGTACGGAATCATCACCAGCTAAACAGTCTCAGCTCTCCATTGCCTCTTCCTCTTCCATCGCTTCGACCGTCATGAAAGATACCCGCTTGTCAATTTTTCCAGAAAAGCAAGAAAGTGTTCATCCGAGAACCAGAAATCCCGGGACTGGGTCTCCGTCTCCGACTGCTCTAGGGATCCTCCTAAAATCTTCAGTGTTCAGAGATCTGGTGGAGAAGAATTTGAAGGGAGTTGAAGAGAATGACACAGAAAATCATACAAAACGAAGCAATGTTCCTTATTTATGCTCCGCCATTGGAGGTTTAGTGCCTGCTGTGAATTCTGGATAG | 2340 | 48.93 | MMSVLLLLGVVAHAHIGEFDEYWKQREEEAKVAALDAYDPNPEAVADSFNAQVGKAIAGTNTTRRNLKKMRGPCRATNPIDRCWRCDPNWANNRKKLATCVLGFGHKTIGGQYGRFYVVTDASDSDLINPKLGTLRHAVIQKEPLWIIFSRSMVIRLTQELMVASHKTIDARGADVHIAFGAGITVQFVTNVIIHGLHIHDIVSGTGGLIRDSVDHYGFRTKSDGDGISIFGSSNVWIDHVSMSNCQDGLIDAIMGSTGITISNCHFTHHNEVMLFGASDSYSGDSIMQVTVAFNHFGRGLVQRMPRCRWGFVHVVNNDYTHWLMYAIGGSQHPTIVSQGNRFIAPHNAAAKEVTKRDYAPPEVWKSWTWRSEGDLLLNGAFFVRSGDQTKRRPYQRLDMISYKPGTFVSRLTRFSGALREREMEAPVSKSELCRSGRNYCVVADSEPGPNGRVKRRRRDSSSIATGCGGQPFDQLLQNPSEIDQSTTISAPKRSSRFRGVSRHRGTGRYEAHLWDKGSWNPTQKKKGKQGAHDEEESAARAYDLAALKYWGASSFTNFPISDYEKEIEIMVRVSKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAMTNFDLSTYIRWLKPEANLLPPRTESSPAKQSQLSIASSSSIASTVMKDTRLSIFPEKQESVHPRTRNPGTGSPSPTALGILLKSSVFRDLVEKNLKGVEENDTENHTKRSNVPYLCSAIGGLVPAVNSG | 779 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 4714030 | 4718457 | + | BLOR00418 | Blo01g00418 | 54858 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Blo01g00418 | 779 | Gene3D | - | 77 | 420 | IPR012334 | - | |
Blo01g00418 | 779 | SUPERFAMILY | DNA-binding domain | 496 | 562 | IPR016177 | GO:0003677 | |
Blo01g00418 | 779 | PANTHER | PECTATE LYASE 18-RELATED | 9 | 419 | IPR045032 | GO:0030570 | |
Blo01g00418 | 779 | PANTHER | PECTATE LYASE | 9 | 419 | - | - | |
Blo01g00418 | 779 | SUPERFAMILY | Pectin lyase-like | 78 | 418 | IPR011050 | - | |
Blo01g00418 | 779 | SUPERFAMILY | DNA-binding domain | 595 | 656 | IPR016177 | GO:0003677 | |
Blo01g00418 | 779 | Pfam | Pectate lyase, N terminus | 15 | 67 | IPR007524 | GO:0030570 | |
Blo01g00418 | 779 | CDD | AP2 | 496 | 562 | IPR001471 | GO:0003700|GO:0006355 | |
Blo01g00418 | 779 | Gene3D | AP2/ERF domain | 496 | 562 | IPR036955 | GO:0003700|GO:0006355 | |
Blo01g00418 | 779 | Gene3D | AP2/ERF domain | 595 | 656 | IPR036955 | GO:0003700|GO:0006355 | |
Blo01g00418 | 779 | Pfam | AP2 domain | 595 | 646 | IPR001471 | GO:0003700|GO:0006355 | |
Blo01g00418 | 779 | Pfam | AP2 domain | 496 | 552 | IPR001471 | GO:0003700|GO:0006355 | |
Blo01g00418 | 779 | ProSiteProfiles | AP2/ERF domain profile. | 596 | 654 | IPR001471 | GO:0003700|GO:0006355 | |
Blo01g00418 | 779 | CDD | AP2 | 595 | 656 | IPR001471 | GO:0003700|GO:0006355 | |
Blo01g00418 | 779 | ProSiteProfiles | AP2/ERF domain profile. | 497 | 560 | IPR001471 | GO:0003700|GO:0006355 | |
Blo01g00418 | 779 | MobiDBLite | consensus disorder prediction | 520 | 536 | - | - | |
Blo01g00418 | 779 | SMART | amb_all | 152 | 349 | IPR002022 | - | |
Blo01g00418 | 779 | MobiDBLite | consensus disorder prediction | 707 | 726 | - | - | |
Blo01g00418 | 779 | MobiDBLite | consensus disorder prediction | 512 | 536 | - | - | |
Blo01g00418 | 779 | MobiDBLite | consensus disorder prediction | 445 | 472 | - | - | |
Blo01g00418 | 779 | Pfam | Pectate lyase | 162 | 343 | IPR002022 | - | |
Blo01g00418 | 779 | PRINTS | Pollen allergen Amb family signature | 368 | 392 | IPR018082 | - | |
Blo01g00418 | 779 | PRINTS | Pollen allergen Amb family signature | 304 | 323 | IPR018082 | - | |
Blo01g00418 | 779 | PRINTS | Pollen allergen Amb family signature | 100 | 117 | IPR018082 | - | |
Blo01g00418 | 779 | PRINTS | Pollen allergen Amb family signature | 160 | 176 | IPR018082 | - | |
Blo01g00418 | 779 | PRINTS | Pollen allergen Amb family signature | 224 | 245 | IPR018082 | - | |
Blo01g00418 | 779 | PRINTS | Pollen allergen Amb family signature | 124 | 149 | IPR018082 | - | |
Blo01g00418 | 779 | PRINTS | Pollen allergen Amb family signature | 326 | 345 | IPR018082 | - | |
Blo01g00418 | 779 | PRINTS | Pollen allergen Amb family signature | 398 | 421 | IPR018082 | - | |
Blo01g00418 | 779 | SMART | rav1_2 | 596 | 660 | IPR001471 | GO:0003700|GO:0006355 | |
Blo01g00418 | 779 | SMART | rav1_2 | 497 | 566 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Blo01g00418 | Blo-Chr1:4714030 | Blo17g00352 | Blo-Chr17:3723371 | 0 | dispersed | |
Blo06g00638 | Blo-Chr6:29389774 | Blo01g00418 | Blo-Chr1:4714030 | 6.48E-93 | transposed | |
Blo09g00397 | Blo-Chr9:14885364 | Blo01g00418 | Blo-Chr1:4714030 | 2.26E-51 | transposed | |
Blo13g00664 | Blo-Chr13:29354800 | Blo01g00418 | Blo-Chr1:4714030 | 6.93E-06 | transposed | |
Blo14g00610 | Blo-Chr14:10677634 | Blo01g00418 | Blo-Chr1:4714030 | 8.97E-06 | transposed | |
Blo17g00353 | Blo-Chr17:3726507 | Blo01g00418 | Blo-Chr1:4714030 | 1.16E-120 | transposed | |
Blo01g00418 | Blo-Chr1:4714030 | Blo16g01131 | Blo-Chr16:39837804 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11838 | PF00544 | Pectate_lyase_4 | 1.10E-18 | CL0268 | Blo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Blo01g00418 | K01728 | - | csv:101206497 | 679.863 |