Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00418 ATGATGTCGGTTTTGTTGCTGTTGGGAGTGGTGGCCCACGCCCACATCGGAGAGTTTGATGAATACTGGAAACAAAGAGAAGAGGAAGCCAAGGTGGCGGCGCTGGACGCTTATGATCCTAATCCTGAGGCCGTCGCTGATAGCTTTAACGCTCAAGTTGGCAAAGCAATTGCAGGTACAAACACCACAAGAAGGAACCTGAAGAAGATGAGAGGTCCATGCAGGGCGACGAATCCCATCGACAGGTGCTGGAGGTGCGACCCTAACTGGGCCAATAACAGGAAGAAGCTAGCCACCTGCGTCCTGGGCTTCGGTCACAAGACCATCGGAGGACAATACGGCCGATTCTACGTCGTTACTGACGCCTCCGACTCCGACCTTATTAACCCTAAACTAGGCACTCTTCGCCACGCAGTGATTCAGAAGGAACCCCTCTGGATCATCTTCTCCCGGAGCATGGTTATCCGCCTAACCCAAGAGCTGATGGTGGCCAGCCACAAAACCATCGACGCTCGAGGAGCCGACGTTCATATCGCGTTCGGAGCCGGAATTACTGTCCAGTTTGTGACGAATGTGATCATCCATGGCCTCCATATCCACGACATTGTTTCCGGCACTGGCGGACTGATCAGGGATTCCGTCGACCACTATGGGTTTAGAACTAAGAGCGACGGGGATGGAATCTCGATCTTCGGATCTTCAAATGTTTGGATCGACCACGTTTCTATGTCCAACTGCCAAGATGGACTGATCGACGCTATTATGGGGTCCACTGGTATAACCATCTCGAACTGCCACTTCACCCACCATAACGAGGTGATGTTGTTCGGAGCAAGCGACAGCTATTCCGGCGATTCAATAATGCAAGTGACGGTAGCTTTCAACCATTTCGGAAGAGGATTGGTGCAGAGAATGCCAAGGTGCAGATGGGGTTTCGTCCACGTCGTTAACAACGACTACACCCACTGGCTCATGTACGCCATTGGAGGCAGCCAACACCCCACCATTGTTAGCCAAGGCAATCGCTTCATCGCTCCTCACAACGCAGCTGCTAAAGAGGTGACGAAGAGGGATTACGCTCCGCCGGAGGTGTGGAAAAGTTGGACATGGAGATCGGAGGGAGATCTACTGTTGAACGGAGCATTCTTCGTTAGATCAGGAGATCAAACCAAGAGAAGGCCATATCAGAGGCTGGACATGATCTCCTACAAGCCTGGAACCTTCGTTTCCCGACTAACTCGCTTCTCCGGCGCACTCAGAGAGAGAGAGATGGAAGCCCCCGTGTCTAAATCGGAGCTTTGCCGGAGTGGAAGAAATTATTGTGTTGTGGCGGATAGTGAGCCGGGGCCTAACGGGCGAGTAAAGAGACGTAGAAGAGATTCCTCTTCTATCGCAACTGGTTGTGGTGGTCAACCTTTTGATCAGCTGCTACAGAACCCATCTGAGATTGATCAATCCACTACCATTTCTGCACCAAAAAGAAGCTCCAGATTTCGCGGAGTCAGCAGACATAGAGGAACTGGGAGATACGAAGCTCATTTATGGGATAAAGGGTCTTGGAATCCAACTCAAAAGAAGAAGGGAAAGCAAGGAGCTCACGATGAAGAAGAATCAGCAGCAAGAGCATATGATTTAGCTGCTCTTAAGTACTGGGGAGCATCGTCTTTCACCAACTTTCCTATTTCTGATTATGAGAAAGAAATTGAGATTATGGTGAGAGTATCGAAAGAAGAATACTTGGCCTCTTTAAGAAGAAGGAGTAGTGGTTTTTCCAGAGGTGTATCCAAGTATAGAGGAGTTGCAAGGCACCATCACAATGGGAGATGGGAGGCAAGAATAGGAAGAGTGTTTGGAAACAAGTATCTCTATCTCGGCACTTACAGTACTCAAGAGGAAGCTGCTCGAGCTTACGATATAGCTGCAATTGAGTACAGAGGAATCAATGCAATGACCAACTTTGATTTAAGCACATACATAAGATGGCTTAAACCCGAGGCTAATCTTCTTCCGCCACGTACGGAATCATCACCAGCTAAACAGTCTCAGCTCTCCATTGCCTCTTCCTCTTCCATCGCTTCGACCGTCATGAAAGATACCCGCTTGTCAATTTTTCCAGAAAAGCAAGAAAGTGTTCATCCGAGAACCAGAAATCCCGGGACTGGGTCTCCGTCTCCGACTGCTCTAGGGATCCTCCTAAAATCTTCAGTGTTCAGAGATCTGGTGGAGAAGAATTTGAAGGGAGTTGAAGAGAATGACACAGAAAATCATACAAAACGAAGCAATGTTCCTTATTTATGCTCCGCCATTGGAGGTTTAGTGCCTGCTGTGAATTCTGGATAG 2340 48.93 MMSVLLLLGVVAHAHIGEFDEYWKQREEEAKVAALDAYDPNPEAVADSFNAQVGKAIAGTNTTRRNLKKMRGPCRATNPIDRCWRCDPNWANNRKKLATCVLGFGHKTIGGQYGRFYVVTDASDSDLINPKLGTLRHAVIQKEPLWIIFSRSMVIRLTQELMVASHKTIDARGADVHIAFGAGITVQFVTNVIIHGLHIHDIVSGTGGLIRDSVDHYGFRTKSDGDGISIFGSSNVWIDHVSMSNCQDGLIDAIMGSTGITISNCHFTHHNEVMLFGASDSYSGDSIMQVTVAFNHFGRGLVQRMPRCRWGFVHVVNNDYTHWLMYAIGGSQHPTIVSQGNRFIAPHNAAAKEVTKRDYAPPEVWKSWTWRSEGDLLLNGAFFVRSGDQTKRRPYQRLDMISYKPGTFVSRLTRFSGALREREMEAPVSKSELCRSGRNYCVVADSEPGPNGRVKRRRRDSSSIATGCGGQPFDQLLQNPSEIDQSTTISAPKRSSRFRGVSRHRGTGRYEAHLWDKGSWNPTQKKKGKQGAHDEEESAARAYDLAALKYWGASSFTNFPISDYEKEIEIMVRVSKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAMTNFDLSTYIRWLKPEANLLPPRTESSPAKQSQLSIASSSSIASTVMKDTRLSIFPEKQESVHPRTRNPGTGSPSPTALGILLKSSVFRDLVEKNLKGVEENDTENHTKRSNVPYLCSAIGGLVPAVNSG 779
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4714030 4718457 + BLOR00418 Blo01g00418 54858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00418 779 Gene3D - 77 420 IPR012334 -
Blo01g00418 779 SUPERFAMILY DNA-binding domain 496 562 IPR016177 GO:0003677
Blo01g00418 779 PANTHER PECTATE LYASE 18-RELATED 9 419 IPR045032 GO:0030570
Blo01g00418 779 PANTHER PECTATE LYASE 9 419 - -
Blo01g00418 779 SUPERFAMILY Pectin lyase-like 78 418 IPR011050 -
Blo01g00418 779 SUPERFAMILY DNA-binding domain 595 656 IPR016177 GO:0003677
Blo01g00418 779 Pfam Pectate lyase, N terminus 15 67 IPR007524 GO:0030570
Blo01g00418 779 CDD AP2 496 562 IPR001471 GO:0003700|GO:0006355
Blo01g00418 779 Gene3D AP2/ERF domain 496 562 IPR036955 GO:0003700|GO:0006355
Blo01g00418 779 Gene3D AP2/ERF domain 595 656 IPR036955 GO:0003700|GO:0006355
Blo01g00418 779 Pfam AP2 domain 595 646 IPR001471 GO:0003700|GO:0006355
Blo01g00418 779 Pfam AP2 domain 496 552 IPR001471 GO:0003700|GO:0006355
Blo01g00418 779 ProSiteProfiles AP2/ERF domain profile. 596 654 IPR001471 GO:0003700|GO:0006355
Blo01g00418 779 CDD AP2 595 656 IPR001471 GO:0003700|GO:0006355
Blo01g00418 779 ProSiteProfiles AP2/ERF domain profile. 497 560 IPR001471 GO:0003700|GO:0006355
Blo01g00418 779 MobiDBLite consensus disorder prediction 520 536 - -
Blo01g00418 779 SMART amb_all 152 349 IPR002022 -
Blo01g00418 779 MobiDBLite consensus disorder prediction 707 726 - -
Blo01g00418 779 MobiDBLite consensus disorder prediction 512 536 - -
Blo01g00418 779 MobiDBLite consensus disorder prediction 445 472 - -
Blo01g00418 779 Pfam Pectate lyase 162 343 IPR002022 -
Blo01g00418 779 PRINTS Pollen allergen Amb family signature 368 392 IPR018082 -
Blo01g00418 779 PRINTS Pollen allergen Amb family signature 304 323 IPR018082 -
Blo01g00418 779 PRINTS Pollen allergen Amb family signature 100 117 IPR018082 -
Blo01g00418 779 PRINTS Pollen allergen Amb family signature 160 176 IPR018082 -
Blo01g00418 779 PRINTS Pollen allergen Amb family signature 224 245 IPR018082 -
Blo01g00418 779 PRINTS Pollen allergen Amb family signature 124 149 IPR018082 -
Blo01g00418 779 PRINTS Pollen allergen Amb family signature 326 345 IPR018082 -
Blo01g00418 779 PRINTS Pollen allergen Amb family signature 398 421 IPR018082 -
Blo01g00418 779 SMART rav1_2 596 660 IPR001471 GO:0003700|GO:0006355
Blo01g00418 779 SMART rav1_2 497 566 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00418 Blo-Chr1:4714030 Blo17g00352 Blo-Chr17:3723371 0 dispersed
Blo06g00638 Blo-Chr6:29389774 Blo01g00418 Blo-Chr1:4714030 6.48E-93 transposed
Blo09g00397 Blo-Chr9:14885364 Blo01g00418 Blo-Chr1:4714030 2.26E-51 transposed
Blo13g00664 Blo-Chr13:29354800 Blo01g00418 Blo-Chr1:4714030 6.93E-06 transposed
Blo14g00610 Blo-Chr14:10677634 Blo01g00418 Blo-Chr1:4714030 8.97E-06 transposed
Blo17g00353 Blo-Chr17:3726507 Blo01g00418 Blo-Chr1:4714030 1.16E-120 transposed
Blo01g00418 Blo-Chr1:4714030 Blo16g01131 Blo-Chr16:39837804 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11838 PF00544 Pectate_lyase_4 1.10E-18 CL0268 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00418 K01728 - csv:101206497 679.863