Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00419 ATGCAGGAGGCGAAAAATAAGCTTGGTAGCCATAGCCAAGAGTTGAAGAAGAAAGAGCGCCACATTGTCACTTGGAGTCAACAGGAGGATGATATCCTGCGCCAGCAAATTAAGCTTCATGGAACCGAAAATTGGTCTATCATCACATCAAAATTCGAGGATAAAACAACAAGACAGTGTAGAAGAAGATGGTACACGTACTTGAACTCTGATTTCAAGAAAGGGGGATGGTCACCTGAGGAAGATTTGCTCTTGTGCGAGGCTCAAAAAATATTTGGTAATAGATGGACAGAGATAGCAAAGGTGGTTTCGGGCAGAACGGACAATGCTGTTAAAAACAGATTCTCCACCCTGTGTAAGAAGAAAGCAAAATATGAAGCTTTGGTGGCAAAAGAGAATACCATTTATAACATCAATGCAAACAACAAAAGGGTCTTGAGCCAAACCGAGTTCGTAGCTGATGGATCCTCAGAGACTAGTTTTTCCAAGGATAAGATAAGGCGGACAAGCAAGTCAGACATCAATGAAAATTGTAATTTTGATGATGGATTACATAAGCAAGATGAGACAATAATGGATCAGCAGATTAGACCTCCAATTGCGGTATTGATTGAGAACTTACACAGTGTAAATAGTTTTCCAGTTAAGAATCATTCTAGCGATGCCATGAAGATTCTCAACGACGATAAAAGCAACAACCTACAAGGAGCATTTCTCGAAAAGGACAATTCGAAGATAAGTGCTTTGATGCAACACGAAGAGTTACTCTCCTCACTTGTACGGAAGGTTCAAACTGAAAATACAGATCAAAGCCTTGAGAATGCCTGGAAGGTTCTCAAAGATTTTCTGTACAATAGCAAAGATAATGAAGCTCTCAGACATAGAGTTCCAGATATTGATCTTCAACTTGAAGATATTAAAGATTTCATGGAGGACTTGAGAAGCAGTAACGGTGGAAATCGTTGGAGACAACATGATCTACATGAGTCTCCGAGCAGTTCAGAATGCAGCTCAGGATCAAATTTCCCATCCCAAACGGCTGAAGAGCAAATAAAAATAGAACAAACTCAAACTGAGGAAGATACACTTCATCAGGATATTAATTCTGGACACCATTCTAATAAAATTGGAGAGTATAATGGTATTGATGAGTGTGAGAAAGGAACTCCTCCTTCTGGTGCAAATGCAAAACAAGAGATTTTGCTGTGCTGCGATGAGCAATCAAATAAAGATGCTGTTCCTTCCGCATCAAGCACAGAGTTTAGTTCCCCTCTGCAAGTAACTCCAATATTTAGATCGTTGGCTGCAGGAATCCCCAGTCCAGTGTTTTCTGAAAGCTTCGGTTATGATCCCTCGGCGGAGTTGTATGCACTGGTCGTCGATACGAAACCAAGGAATGCTACTTCAAAAGTACCTGAACCCAGGTCCTGGTTTGGTCCAAATGGCCAGTATATCAAAGAGCTTCCTTGTCCAAATTGCCGGGCCAGGGGCTACACACCTTGTACTGAATGTGGAATTGAAAGATCCAGAGCTGGCTGCTCATTATGTAATGGAAGGGGTATAATGACTTGTCAGCAATGTTCGGGAGATCGCGTCATTTGGGAAGAATCCATTGATGAAAGACCGTGGGAGAAAGTGCGCTCTAATTCTCCGCTCCGAATGAAGGAAGATGATGAAGTGGATAACTTAGATATAAAGCTGGAGGAAAAGAAGAAATCAAAGCGTATATATCAATCGCCGTCCCGTGAAGTTGGATTAAAAATTAGTCGATCACTAAAAAGTCTCAATGCAAAAACTGGGATTTTTAGCAAAAGAATGAAAATTATCCATGGCGATCCCGCGCTTCAAGCGCAGAGGGTGGCTGCAATCAAGAAAGCCAAAGGAAGCGATGCAGCGAGAAAGAAAGCCTCTGACGCTTTAAAAGCTTTCTTTAGTGACCCAGAAAACCGAAGGCTGAGGAGCATAGCCATGAAAGGTGTCAAGTTTTACTGCAAAAACTGTGGAAAGGAGGGCCATAGAAGACACTACTGTCCAGAACTTGGCTTGGTCAGCCAGAAGTTCAAATGTCGGGCGTGTGGCGAAAAGGGCCACAATATAAGAACTTGTAAGAAGTTGAGTATGACAGACGAAAAGCTCGAATTTAGGAAGGATAAGCATAGCAGAGTATGTGGGGAAAGTGGTCACAACAGAAGGACTTGCCCGGTTTTGGTATCGAAATCTGAATCCAAACCAAGCAATCGGAATGGTAAGGCCAAGCTTCGAAGCTGCCGAATTTTTCGTCAAATGGGTCATAATCGGCGGAAGTGTCCGGCGAAGATGGCGATAAATTTAGCCGAAATGGATGGGAAAGCTATCGTTTTGAAGCCCGGGAGAAGGAAATATACTTGCGGGTTTTGTGGAGAGGACGCGCATAATGTTAGGACATGCCCTGATCGAAAAGATGAATTACTTGCCGATCGTTCGACCGATTGA 2472 42.64 MQEAKNKLGSHSQELKKKERHIVTWSQQEDDILRQQIKLHGTENWSIITSKFEDKTTRQCRRRWYTYLNSDFKKGGWSPEEDLLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKKAKYEALVAKENTIYNINANNKRVLSQTEFVADGSSETSFSKDKIRRTSKSDINENCNFDDGLHKQDETIMDQQIRPPIAVLIENLHSVNSFPVKNHSSDAMKILNDDKSNNLQGAFLEKDNSKISALMQHEELLSSLVRKVQTENTDQSLENAWKVLKDFLYNSKDNEALRHRVPDIDLQLEDIKDFMEDLRSSNGGNRWRQHDLHESPSSSECSSGSNFPSQTAEEQIKIEQTQTEEDTLHQDINSGHHSNKIGEYNGIDECEKGTPPSGANAKQEILLCCDEQSNKDAVPSASSTEFSSPLQVTPIFRSLAAGIPSPVFSESFGYDPSAELYALVVDTKPRNATSKVPEPRSWFGPNGQYIKELPCPNCRARGYTPCTECGIERSRAGCSLCNGRGIMTCQQCSGDRVIWEESIDERPWEKVRSNSPLRMKEDDEVDNLDIKLEEKKKSKRIYQSPSREVGLKISRSLKSLNAKTGIFSKRMKIIHGDPALQAQRVAAIKKAKGSDAARKKASDALKAFFSDPENRRLRSIAMKGVKFYCKNCGKEGHRRHYCPELGLVSQKFKCRACGEKGHNIRTCKKLSMTDEKLEFRKDKHSRVCGESGHNRRTCPVLVSKSESKPSNRNGKAKLRSCRIFRQMGHNRRKCPAKMAINLAEMDGKAIVLKPGRRKYTCGFCGEDAHNVRTCPDRKDELLADRSTD 823
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4724619 4740354 - BLOR00419 Blo01g00419 54859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00419 823 ProSiteProfiles Zinc finger CCHC-type profile. 664 679 IPR001878 GO:0003676|GO:0008270
Blo01g00419 823 CDD SANT 77 118 IPR001005 -
Blo01g00419 823 Gene3D - 736 816 - -
Blo01g00419 823 Coils Coil 1 21 - -
Blo01g00419 823 SUPERFAMILY Retrovirus zinc finger-like domains 661 704 IPR036875 GO:0003676|GO:0008270
Blo01g00419 823 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 444 743 - -
Blo01g00419 823 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 746 814 - -
Blo01g00419 823 SUPERFAMILY Homeodomain-like 22 115 IPR009057 -
Blo01g00419 823 SMART sant 73 121 IPR001005 -
Blo01g00419 823 SMART sant 21 70 IPR001005 -
Blo01g00419 823 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 444 743 - -
Blo01g00419 823 Gene3D - 661 713 - -
Blo01g00419 823 Pfam Myb-like DNA-binding domain 25 84 - -
Blo01g00419 823 SMART c2hcfinal6 721 735 IPR001878 GO:0003676|GO:0008270
Blo01g00419 823 SMART c2hcfinal6 795 811 IPR001878 GO:0003676|GO:0008270
Blo01g00419 823 SMART c2hcfinal6 688 704 IPR001878 GO:0003676|GO:0008270
Blo01g00419 823 SMART c2hcfinal6 755 771 IPR001878 GO:0003676|GO:0008270
Blo01g00419 823 SMART c2hcfinal6 663 679 IPR001878 GO:0003676|GO:0008270
Blo01g00419 823 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 746 814 - -
Blo01g00419 823 MobiDBLite consensus disorder prediction 316 330 - -
Blo01g00419 823 CDD SANT 24 68 IPR001005 -
Blo01g00419 823 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 123 IPR017930 -
Blo01g00419 823 ProSiteProfiles Zinc finger CCHC-type profile. 688 704 IPR001878 GO:0003676|GO:0008270
Blo01g00419 823 Gene3D - 76 145 - -
Blo01g00419 823 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 68 IPR017930 -
Blo01g00419 823 ProSiteProfiles Myb-like domain profile. 69 119 IPR001005 -
Blo01g00419 823 Gene3D - 14 73 - -
Blo01g00419 823 MobiDBLite consensus disorder prediction 316 349 - -
Blo01g00419 823 ProSiteProfiles Myb-like domain profile. 25 68 IPR001005 -
Blo01g00419 823 MobiDBLite consensus disorder prediction 331 349 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00419 Blo-Chr1:4724619 Blo16g01126 Blo-Chr16:39792572 0 dispersed
Blo01g00419 Blo-Chr1:4724619 Blo06g00899 Blo-Chr6:32230758 1.80E-92 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11839 PF13921 Myb_DNA-bind_6 1.30E-13 CL0123 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00419 K09422 - zju:107428833 537.339