Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00432 ATTCTCTCCGAGTTCATAATGGGGAAGGCGGGGTTGTTTGATCTCGAGAAGCACTTCGCCTTCTATGGGGCTTACCACAGCAATCCAATCAACATCTCGATTCACATGTTGCTGGTGTGGCCCGTTGTTCTGGTGAGTCAACTGTTATGCTGGACTGGACAGTTCATCGGCCATGGCGTCTTCGAGAAACGAGCGCCTGCTCTCTTCGACAACCTTGTTGAAGCACTTGTGATGGCTCCATTTTTTGTTCTCTTGGAGGCTCTTCAAATATTTTTCGCTTACGAACCATATCCCGGCTTCCATGCAATAGTTCAAGCTAAAATCGAGGAGGAAATCGACGAATGGAAAGATAAGAAGCAGAATTTAATCCCATAG 375 46.67 ILSEFIMGKAGLFDLEKHFAFYGAYHSNPINISIHMLLVWPVVLVSQLLCWTGQFIGHGVFEKRAPALFDNLVEALVMAPFFVLLEALQIFFAYEPYPGFHAIVQAKIEEEIDEWKDKKQNLIP 124
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4864397 4865870 + BLOR00432 Blo01g00432 54872

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00432 124 Pfam 2-hydroxy-palmitic acid dioxygenase Mpo1-like 14 45 IPR009305 -
Blo01g00432 124 Pfam 2-hydroxy-palmitic acid dioxygenase Mpo1-like 40 89 IPR009305 -
Blo01g00432 124 PANTHER DUF962 DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_8G05310) 38 123 IPR009305 -
Blo01g00432 124 PANTHER DUF962 DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_8G05310) 7 42 IPR009305 -
Blo01g00432 124 PANTHER YGL010W-LIKE PROTEIN 38 123 - -
Blo01g00432 124 PANTHER YGL010W-LIKE PROTEIN 7 42 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00432 - - - pvy:116108677 145.206
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00432 Blo-Chr1:4864397 Blo09g00166 Blo-Chr9:5487215 5.18E-07 dispersed
Blo01g00432 Blo-Chr1:4864397 Blo15g00323 Blo-Chr15:3734936 4.75E-17 wgd
Blo01g00432 Blo-Chr1:4864397 Blo06g01227 Blo-Chr6:35885408 2.18E-16 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g933 Blo01g00432 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe02g02335 Bma01g00105 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0019446 0 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 4
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00432 Blo_Chr01 FPKM 6.232172 4.728624 6.427033 6.646731 4.825849 3.76086 3.515013 9.510906 9.050982 9.876504