Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00438 ATGGCTTTTCTCTTAGCTCAGTCTTCACCCTCAGCTTTCCTTGGCTCTCACATCTCATACAACCGCTTCTCCTTCATTACAGAGAGACCACTTCTGCAAACCAAACGACGAGGGCCTTTCATTGTCAGCTCGATGGAATTGGATCCTTCGCTTCCACCGTCAGTTAGAACCTTCTGGCAATGGCTTCGCGGCGAGGGCGTCGTCTCTGCGAAGACTCCGGTGAAGCCGGCTGTTGTCGCGGAAGGTCTGGGACTAGTAGCGCAGAGAGACCTAGCGCGAAACGAGGTCGTTCTGGAGGTGCCAAAAAGGCTTTGGATTAATCCCGGCGCTGTGGCTTCTTCAGATATTGGAAATGTGTGTAGTGGATTGAAACCATGGGTGTCTGTTGCTTTATTTTTGACGCGAGAGAAGTTTAGGGATGACTCTCCTTGGCGAATTTACTTTGATGTTCTTCCTCAGGAGACTAATTCGACTGTATTTTGGTCAGAAGAGGAGCTTTCTGAGCTTCAAGGAACCCAACTTCTGAGCACGACATTGGGGGTGAAAGAATATGTGCAGAGCGAATTTGTTAAAGTTGAAGAAGAGATTATTCTCCCCCACAAGCAGCTCTTCCCATTTCATATAACTTTGGAGGACTTCTTCTGGGCATTTGGTGTACTAAGATCAAGAGCATTTTCTCGACTTCGCGGTCAAAATCTTGTTTTGATCCCTTTGGCAGACTTGATCAATCATGGTACCCACATAACCTCTGAAGATCATGCACAAGAGGTTAAAGGAGCAGCCGGCCTTTTCTCGTGGGACATCCTGTTTTCTCTGAGGACCCCAGTTTCTCTCAAAGCCGGTGAGCAGGTTTTGATTCAATATGATATGAAGAAGAGCAATGCTGAATTGGCTATGGACTATGGGTTCACAGAGACAAAAGAAGATCGAAACACTTTTACATTAACACTCGAGATATCAGAGTCTGATCCCTTTTTTGGCGACAAATTGGACATTTCAGAGTCAAATGGATTGGGCGAGACTGCCTACTTCGACATCATTCAAAACCAACCATTTCCCCCAACAATGCTTCCGTTTTTGCGCCTTCTAGCTCTCGGAGGAACTGATGCATTCCTCTTGGAATCTCTTTTCAGAAACTCTGTTTGGGGTCATCTTGAATTGCCTGTAAGCCGTGAAAATGAAGAACTCATTTGTCGAGTGATCCGAGATGCCTGTAAGGCTGCACTTTCTGGCTACCATACCACCATTGAAGAGGATGAGAAACTTCAAGAAGAAAATCTGAGTCCAAGGCTAGAGATTGCAGTTGAAGTAAGGAAAGGAGAGAAGAAGGTGCTGAAGCAAATTGATGAAATCTTCAAGAAGAGAGAACTGGAATTGAATGGGTTAGAATACTACCATGAAAGAAGGCTCAAGGACCTTGGCCTCTGTGGAGAACAAGGTGAAATCATCTTCTGGGAGCAGAAATAG 1467 45.6 MAFLLAQSSPSAFLGSHISYNRFSFITERPLLQTKRRGPFIVSSMELDPSLPPSVRTFWQWLRGEGVVSAKTPVKPAVVAEGLGLVAQRDLARNEVVLEVPKRLWINPGAVASSDIGNVCSGLKPWVSVALFLTREKFRDDSPWRIYFDVLPQETNSTVFWSEEELSELQGTQLLSTTLGVKEYVQSEFVKVEEEIILPHKQLFPFHITLEDFFWAFGVLRSRAFSRLRGQNLVLIPLADLINHGTHITSEDHAQEVKGAAGLFSWDILFSLRTPVSLKAGEQVLIQYDMKKSNAELAMDYGFTETKEDRNTFTLTLEISESDPFFGDKLDISESNGLGETAYFDIIQNQPFPPTMLPFLRLLALGGTDAFLLESLFRNSVWGHLELPVSRENEELICRVIRDACKAALSGYHTTIEEDEKLQEENLSPRLEIAVEVRKGEKKVLKQIDEIFKKRELELNGLEYYHERRLKDLGLCGEQGEIIFWEQK 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4887213 4889903 + BLOR00438 Blo01g00438 54878

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00438 488 ProSiteProfiles Plant LSMT protein-lysine methyltransferase family profile. 39 488 IPR011192 GO:0009507|GO:0030785
Blo01g00438 488 Pfam SET domain 82 288 IPR001214 GO:0005515
Blo01g00438 488 Pfam Rubisco LSMT substrate-binding 321 445 IPR015353 -
Blo01g00438 488 Gene3D - 305 469 IPR036464 -
Blo01g00438 488 PIRSF RMT_SET 1 488 IPR011192 GO:0009507|GO:0030785
Blo01g00438 488 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 313 485 IPR036464 -
Blo01g00438 488 CDD SET_RBCMT 66 304 IPR044431 GO:0016279|GO:0018022
Blo01g00438 488 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 34 482 - -
Blo01g00438 488 Gene3D set domain protein methyltransferase, domain 1 52 303 - -
Blo01g00438 488 ProSiteProfiles SET domain profile. 65 289 IPR001214 GO:0005515
Blo01g00438 488 PANTHER [FRUCTOSE-BISPHOSPHATE ALDOLASE]-LYSINE N-METHYLTRANSFERASE, CHLOROPLASTIC 34 482 - -
Blo01g00438 488 SUPERFAMILY SET domain 52 308 IPR046341 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00438 K00592 RBCMT; [ribulose-bisphosphate carboxylase]/[fructose-bisphosphate aldolase]-lysine N-methyltransferase [EC:2.1.1.127 2.1.1.259] - zju:107428930 716.842
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00438 Blo-Chr1:4887213 Blo13g00444 Blo-Chr13:24743707 6.33E-25 dispersed
Blo01g00438 Blo-Chr1:4887213 Blo13g00902 Blo-Chr13:31542259 9.93E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g961 Blo01g00438 . Bda01g02141 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g00109 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007838 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 4 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00438 Blo_Chr01 FPKM 20.963991 24.252522 4.276112 4.425048 0.0 0.465542 0.358042 9.967355 11.26829 10.309193