Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00440 ATGTCTGCGTCATACCTTCCAGCTACTACTGACTCAGTTGCTGAGGCTTTAGAAGCAAAAACTGCATCTGAAGCAATCTCTATCCTCTATGGCATACTTGAAAACCCCTCATCTTCATCAGAGGCCCTGCGGATAAAAGAACAGGCCATCACAAATCTTTCTGATCTTCTTAGGCAAGAGAATCGAGCAGAGGATCTTCGAGCTCTTCTAACTCAACTGAGGCCTTTTTTCAACCTGATTCCAAAAGCAAAAACTGCAAAAATCGTTCGCGGAATAATCGATGCTGTGGCCAAAATACCTGGAACGTCAGATCTCCAGATTTCGCTATGCAAAGAAATGGTGCAGTGGACCCGTGCTGAGAAGCGAACTTTCCTAAGGCAACGAGTGGAGGCCAGACTTGCAGCTCTTTTGATGGAAAATAAGGAGTATCCAGAAGCACTTAATCTCCTTTCAGGCTTAATTAAGGAAGTTAGAAGATTAGACGACAAGCTTCTTCTTGTGGACATAGATTTGTTGGAGAGTAAGCTTCATTTTTCTTTAAGGAATCTCCCTAAAGCTAAGGCTGCACTGACAGCAGCAAGAACAGCTGCTAATGCCATTTATGTGCCGCCAGCTCAGCAGGGCACCATTGACTTACAAAGTGGCATCCTCCATGCTGAAGAGAAGGATTACAAAACTGGTTACAGTTATTTCTTTGAAGCTTTTGAAGCTTTCAATGCGCTTGAGGATCCCCGTGCTGTATTTAGCCTCAAGTATATGTTATTGTGCAAGATAATGGTTAATCAGTCTGATGACGTGGCAGGAATTATATCATCAAAGGCTGGACTGCAATATCTGGGGCCTGAGCTGGATGCAATGAAAGCAGTTGCCGATGCTCATTCCAAGCGCTCTCTGAAGCTTTTTGAGACTGCCCTAAGGGATTTTAAGGCTCAACTAGAAGAAGACCCTATTGTCCACAGACATCTTTCTTCCCTCTATGACACTCTCTTAGAGCAAAATCTCTGTAGGCTGATTGAACCTTTCTCGAGAGTTGAGATTACTCATATTGCTGAGCTAATTGAGCTGCCCATGGACCATGTGGAAAAGAAGTTATCTCAGATGATTCTCGATAAAAAGTTTGCAGGGACTTTGGATCAGGGAGCTGGTTGCCTTGTGATATTTGACGACCTTAAGACCGATGCTATTTATGAGGCTTCATTGGAAACAATTTCAAATATTGGCAAGGTGGTGGATAGTCTTTACGTGAGATCTGCCAAGATTATGGTTTGA 1269 43.34 MSASYLPATTDSVAEALEAKTASEAISILYGILENPSSSSEALRIKEQAITNLSDLLRQENRAEDLRALLTQLRPFFNLIPKAKTAKIVRGIIDAVAKIPGTSDLQISLCKEMVQWTRAEKRTFLRQRVEARLAALLMENKEYPEALNLLSGLIKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTGYSYFFEAFEAFNALEDPRAVFSLKYMLLCKIMVNQSDDVAGIISSKAGLQYLGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPFSRVEITHIAELIELPMDHVEKKLSQMILDKKFAGTLDQGAGCLVIFDDLKTDAIYEASLETISNIGKVVDSLYVRSAKIMV 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4893869 4895137 - BLOR00440 Blo01g00440 54880

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00440 422 Pfam 26S proteasome regulatory subunit RPN6 N-terminal domain 14 128 IPR040773 -
Blo01g00440 422 ProSiteProfiles PCI domain profile. 223 391 IPR000717 -
Blo01g00440 422 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11-LIKE PROTEIN 3 421 - -
Blo01g00440 422 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 3 421 - -
Blo01g00440 422 Coils Coil 46 66 - -
Blo01g00440 422 SUPERFAMILY TPR-like 130 323 IPR011990 GO:0005515
Blo01g00440 422 SUPERFAMILY Winged helix DNA-binding domain 314 395 IPR036390 -
Blo01g00440 422 SMART PINT_4 320 403 IPR000717 -
Blo01g00440 422 Gene3D - 46 421 - -
Blo01g00440 422 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 320 403 - -
Blo01g00440 422 Pfam 26S proteasome subunit RPN6 C-terminal helix domain 393 418 IPR040780 -
Blo01g00440 422 Pfam PCI domain 285 386 IPR000717 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00440 K03036 PSMD11, RPN6; 26S proteasome regulatory subunit N6 - jre:109003228 725.702
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g00440 Blo16g01102 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00440 Blo-Chr1:4893869 Blo05g00324 Blo-Chr5:3699759 3.32E-66 dispersed
Blo03g01194 Blo-Chr3:38174738 Blo01g00440 Blo-Chr1:4893869 3.56E-59 transposed
Blo01g00440 Blo-Chr1:4893869 Blo16g01102 Blo-Chr16:39522729 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g963 Blo01g00440 Blo16g01102 Bda01g02140 Bda11g01200 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01200 . Bpe02g02328 Bma01g00111 Bma06g00711 . . . . . . . . Cpe07g00642 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004931 2 1 2 2 1 1 0 1 1 1 1 1 2 1 1 2 1 2 2 1 1 0 2 1 2 1 2 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00440 Blo_Chr01 FPKM 0.724708 0.734904 10.13032 10.19812 0.736815 1.225348 0.786605 14.184467 13.214909 14.185662