Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00445 ATGAACCTATACGTGCCTCTGTTCAGGCGCAGTACCACCTTGAGAACTCTAACCCAACTCCATGCTCACCTCTTCGTCACGGGTCTTCACGCCGACCCGCGCCCCTCCACCAAGCTCATCGAATCGTACGCCGAAATGGGCAGCCTTCCTTCTTCCAGACTCGTTTTCGAAACCTTCCGAAATCCTGATTCTTTCATGTGGGGTGTACTCGTCAAGTCTTATGAATGGAACCAGTGTTTTGAAGAAGCTGTTTCTCTTTTTCATAAAATGGTGTACCAGCAAATTCAGTTCAACGAGTTTGTGTTCCCTTCCATTTTGAGGGCTTGTTCTGGGTTCGGCGACATGGCTATTGGCGAGAAAGTGCATGGGAGGATTGTTAAGTGCGGGTTCGATGGCGATGCTGTGGTGGACACCTCGTTGCTCAGTATGTATGGAGAAGCAGGTTGTTTGGATGGTGCATGGAAGGTGTTCGATGAAATGCCGGTTAGAGATTTGGTTTCATGGAGTTCTATTATTTTGTGTAATGTCGAGAATGCGGAGGCTTTGGAAGGCTTGGATGTCTTCCGGCGGATGGTTTCCCATGGAGTTGAGGCAGATTCAGTGACAATGCTTAGTGTTGTTGAGGCTTGTGGGGACGTGAGGAGTTTGAGTTTGGCAAAGTCAGTTCACGGCTATGTCATCAGAAAGGAAATTCAAAATGATGGATCTTTGAAGAGTTCTCTCATTGTAATGTACACTAAATGTGATGATTTGCGTAGTTCGGAGTCGACCTTTGCAAAGATTTCCCAGCCTGATACTTCTTCCTGGACTGCCATGATCTCCTGCTATAATCAAGCTGGTTTTTCTCATGAAGCTCTGAGGGTTTTCACTGACATGCGAAAATCTGAAGTTGAGGTAAATTCAGTCACCCTATTTGGAATCTTGAGTTCTTGTTCTAGGTTAGGTTTGTTCAAGGAAGGTAGATCAGTTCATTCCTTCATTATACGAAACGCGATAGACCCTCCTCTTGATTTTATAGGACCTGCTCTAATCGAACTATACGCAAACTCTTTGAAAATAAGTGCTTGTAGTAGAATTCTTCATGTGATTGGAGATAGAAATATTTTACCATGGAATATGCTCATTTCAGCTTATGCTCAAAATCAATTGTTGGAGGAAGCATTAGTTGTGTTTGTGAAGTTGAACGCGGACGGACTTAGGCCTGATTCGTTCAGCTTGGCAAGTTCCATTTCCGCTTCGGGAGATTTGGGTCTATTACATTTTGGACAGCAGATTCATAGTCATACTATCAATAGCGGGTATTTCCCGGACGATTATGTTCGCAATTCACTCATCGACATGTACTCCAATTGCGGGTTTGTTGATTTAGCGTACAAAATATTCAACGAAATCGAGTGGAGAAGTGTTGTTACTTGGAATTCTATGATGTGTGGATTTTCTCAAAATGGTTACTCAATTGAAGCAATCAAATTATTTGATGAAATGTATTCAAACTGTCAAGAAATGGGTGAAATCACCTTCTTAAGTGCAATCAAAGCTTGCTCCCTTTTGGGGCATCTAGAAAAAGGAAAATGGATTCACCACAAGCTAATCACTCTCGGTTTGATCAAACATCAGTACATCGAAACAGCCCTGACCGACATGTACGGAAAGTGTGGAGACCTCGAAACATCTCAACAAGTTTTCGACAACATGTCGGAAAAGTCTCTAGTCACTTGGAGCACCATGATTGCTTCTTACGGGGCCCACGGTCAGATTAATACCGTCATCGAACTCTACAATCAGATGCTCGATTTGGGTATAAAGCCGAACGAAGTAACCTTCATGAACATCCTCTCGGCGTGTAGCCATGCAGGATTGGTAAAAGAAGGGAAGTTCTATTTCAGCTCCATGACGGAATATGGGATCAAACCGAAAACAGAGCATTTTTCTTGCATGGTCGATATTCTGAGCCGTGCAGGCGAACTCGACGAAGCCTACAAAATTATCAAGTCGATGCCGTTTCCCGTCGATTCAAGCATTTGGGGGGCTCTGCTTAACGGGTGTCGAATCCACCTGAAGCTTAATATGGTAAAGACGATTCAACGGGATCTCTTTAATCTTTCGACAGACGATACTGGATACTACACATTGTTGTCAAATGCGTATGCAGAAGAAGGGGAATGGAATGAGTTTCACAAGGTGAGGAAACTGATGAAATCTACAGGTTTGAAAAAGGTACCTGCTTTTAGTTCAGTTGAGATTGATAGTAGAGTTCATAGATTTGGAGCTGGTGATACTTTTCATTTAGAAAGTAATGAAATCTTTAGGCTGTTGGATAATTTTCAGAGTTTGGCCATGGATGATGGGAATTGTCTTGCATTATTTGAGTTCAGTAAGTGA 2382 42.95 MNLYVPLFRRSTTLRTLTQLHAHLFVTGLHADPRPSTKLIESYAEMGSLPSSRLVFETFRNPDSFMWGVLVKSYEWNQCFEEAVSLFHKMVYQQIQFNEFVFPSILRACSGFGDMAIGEKVHGRIVKCGFDGDAVVDTSLLSMYGEAGCLDGAWKVFDEMPVRDLVSWSSIILCNVENAEALEGLDVFRRMVSHGVEADSVTMLSVVEACGDVRSLSLAKSVHGYVIRKEIQNDGSLKSSLIVMYTKCDDLRSSESTFAKISQPDTSSWTAMISCYNQAGFSHEALRVFTDMRKSEVEVNSVTLFGILSSCSRLGLFKEGRSVHSFIIRNAIDPPLDFIGPALIELYANSLKISACSRILHVIGDRNILPWNMLISAYAQNQLLEEALVVFVKLNADGLRPDSFSLASSISASGDLGLLHFGQQIHSHTINSGYFPDDYVRNSLIDMYSNCGFVDLAYKIFNEIEWRSVVTWNSMMCGFSQNGYSIEAIKLFDEMYSNCQEMGEITFLSAIKACSLLGHLEKGKWIHHKLITLGLIKHQYIETALTDMYGKCGDLETSQQVFDNMSEKSLVTWSTMIASYGAHGQINTVIELYNQMLDLGIKPNEVTFMNILSACSHAGLVKEGKFYFSSMTEYGIKPKTEHFSCMVDILSRAGELDEAYKIIKSMPFPVDSSIWGALLNGCRIHLKLNMVKTIQRDLFNLSTDDTGYYTLLSNAYAEEGEWNEFHKVRKLMKSTGLKKVPAFSSVEIDSRVHRFGAGDTFHLESNEIFRLLDNFQSLAMDDGNCLALFEFSK 793
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4917669 4920050 - BLOR00445 Blo01g00445 54885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00445 793 Pfam E motif 697 747 IPR046848 -
Blo01g00445 793 TIGRFAM PPR: pentatricopeptide repeat domain 138 166 IPR002885 -
Blo01g00445 793 TIGRFAM PPR: pentatricopeptide repeat domain 371 402 IPR002885 -
Blo01g00445 793 TIGRFAM PPR: pentatricopeptide repeat domain 571 605 IPR002885 -
Blo01g00445 793 TIGRFAM PPR: pentatricopeptide repeat domain 268 300 IPR002885 -
Blo01g00445 793 TIGRFAM PPR: pentatricopeptide repeat domain 470 498 IPR002885 -
Blo01g00445 793 Pfam PPR repeat 65 91 IPR002885 -
Blo01g00445 793 Pfam PPR repeat 442 467 IPR002885 -
Blo01g00445 793 Pfam PPR repeat 642 666 IPR002885 -
Blo01g00445 793 Pfam PPR repeat 138 163 IPR002885 -
Blo01g00445 793 Pfam PPR repeat 371 398 IPR002885 -
Blo01g00445 793 Pfam PPR repeat 543 568 IPR002885 -
Blo01g00445 793 Pfam PPR repeat 166 196 IPR002885 -
Blo01g00445 793 Gene3D Tetratricopeptide repeat domain 369 544 IPR011990 GO:0005515
Blo01g00445 793 Gene3D Tetratricopeptide repeat domain 7 115 IPR011990 GO:0005515
Blo01g00445 793 Gene3D Tetratricopeptide repeat domain 545 748 IPR011990 GO:0005515
Blo01g00445 793 Pfam PPR repeat family 468 514 IPR002885 -
Blo01g00445 793 Pfam PPR repeat family 569 616 IPR002885 -
Blo01g00445 793 Pfam PPR repeat family 264 310 IPR002885 -
Blo01g00445 793 Gene3D Tetratricopeptide repeat domain 219 339 IPR011990 GO:0005515
Blo01g00445 793 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 604 638 IPR002885 -
Blo01g00445 793 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 367 401 IPR002885 -
Blo01g00445 793 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 133 167 IPR002885 -
Blo01g00445 793 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 395 774 - -
Blo01g00445 793 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 269 400 - -
Blo01g00445 793 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 12 273 - -
Blo01g00445 793 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 395 774 - -
Blo01g00445 793 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 269 400 - -
Blo01g00445 793 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 12 273 - -
Blo01g00445 793 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 569 603 IPR002885 -
Blo01g00445 793 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 299 IPR002885 -
Blo01g00445 793 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 468 498 IPR002885 -
Blo01g00445 793 Gene3D Tetratricopeptide repeat domain 116 218 IPR011990 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00445 Blo-Chr1:4917669 Blo08g00213 Blo-Chr8:2487371 7.99E-36 dispersed
Blo06g00075 Blo-Chr6:2847856 Blo01g00445 Blo-Chr1:4917669 2.22E-131 transposed
Blo01g00445 Blo-Chr1:4917669 Blo06g00922 Blo-Chr6:32470169 4.04E-40 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00445 - - qsu:112012233 1048.5