Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00445 ATGAACCTATACGTGCCTCTGTTCAGGCGCAGTACCACCTTGAGAACTCTAACCCAACTCCATGCTCACCTCTTCGTCACGGGTCTTCACGCCGACCCGCGCCCCTCCACCAAGCTCATCGAATCGTACGCCGAAATGGGCAGCCTTCCTTCTTCCAGACTCGTTTTCGAAACCTTCCGAAATCCTGATTCTTTCATGTGGGGTGTACTCGTCAAGTCTTATGAATGGAACCAGTGTTTTGAAGAAGCTGTTTCTCTTTTTCATAAAATGGTGTACCAGCAAATTCAGTTCAACGAGTTTGTGTTCCCTTCCATTTTGAGGGCTTGTTCTGGGTTCGGCGACATGGCTATTGGCGAGAAAGTGCATGGGAGGATTGTTAAGTGCGGGTTCGATGGCGATGCTGTGGTGGACACCTCGTTGCTCAGTATGTATGGAGAAGCAGGTTGTTTGGATGGTGCATGGAAGGTGTTCGATGAAATGCCGGTTAGAGATTTGGTTTCATGGAGTTCTATTATTTTGTGTAATGTCGAGAATGCGGAGGCTTTGGAAGGCTTGGATGTCTTCCGGCGGATGGTTTCCCATGGAGTTGAGGCAGATTCAGTGACAATGCTTAGTGTTGTTGAGGCTTGTGGGGACGTGAGGAGTTTGAGTTTGGCAAAGTCAGTTCACGGCTATGTCATCAGAAAGGAAATTCAAAATGATGGATCTTTGAAGAGTTCTCTCATTGTAATGTACACTAAATGTGATGATTTGCGTAGTTCGGAGTCGACCTTTGCAAAGATTTCCCAGCCTGATACTTCTTCCTGGACTGCCATGATCTCCTGCTATAATCAAGCTGGTTTTTCTCATGAAGCTCTGAGGGTTTTCACTGACATGCGAAAATCTGAAGTTGAGGTAAATTCAGTCACCCTATTTGGAATCTTGAGTTCTTGTTCTAGGTTAGGTTTGTTCAAGGAAGGTAGATCAGTTCATTCCTTCATTATACGAAACGCGATAGACCCTCCTCTTGATTTTATAGGACCTGCTCTAATCGAACTATACGCAAACTCTTTGAAAATAAGTGCTTGTAGTAGAATTCTTCATGTGATTGGAGATAGAAATATTTTACCATGGAATATGCTCATTTCAGCTTATGCTCAAAATCAATTGTTGGAGGAAGCATTAGTTGTGTTTGTGAAGTTGAACGCGGACGGACTTAGGCCTGATTCGTTCAGCTTGGCAAGTTCCATTTCCGCTTCGGGAGATTTGGGTCTATTACATTTTGGACAGCAGATTCATAGTCATACTATCAATAGCGGGTATTTCCCGGACGATTATGTTCGCAATTCACTCATCGACATGTACTCCAATTGCGGGTTTGTTGATTTAGCGTACAAAATATTCAACGAAATCGAGTGGAGAAGTGTTGTTACTTGGAATTCTATGATGTGTGGATTTTCTCAAAATGGTTACTCAATTGAAGCAATCAAATTATTTGATGAAATGTATTCAAACTGTCAAGAAATGGGTGAAATCACCTTCTTAAGTGCAATCAAAGCTTGCTCCCTTTTGGGGCATCTAGAAAAAGGAAAATGGATTCACCACAAGCTAATCACTCTCGGTTTGATCAAACATCAGTACATCGAAACAGCCCTGACCGACATGTACGGAAAGTGTGGAGACCTCGAAACATCTCAACAAGTTTTCGACAACATGTCGGAAAAGTCTCTAGTCACTTGGAGCACCATGATTGCTTCTTACGGGGCCCACGGTCAGATTAATACCGTCATCGAACTCTACAATCAGATGCTCGATTTGGGTATAAAGCCGAACGAAGTAACCTTCATGAACATCCTCTCGGCGTGTAGCCATGCAGGATTGGTAAAAGAAGGGAAGTTCTATTTCAGCTCCATGACGGAATATGGGATCAAACCGAAAACAGAGCATTTTTCTTGCATGGTCGATATTCTGAGCCGTGCAGGCGAACTCGACGAAGCCTACAAAATTATCAAGTCGATGCCGTTTCCCGTCGATTCAAGCATTTGGGGGGCTCTGCTTAACGGGTGTCGAATCCACCTGAAGCTTAATATGGTAAAGACGATTCAACGGGATCTCTTTAATCTTTCGACAGACGATACTGGATACTACACATTGTTGTCAAATGCGTATGCAGAAGAAGGGGAATGGAATGAGTTTCACAAGGTGAGGAAACTGATGAAATCTACAGGTTTGAAAAAGGTACCTGCTTTTAGTTCAGTTGAGATTGATAGTAGAGTTCATAGATTTGGAGCTGGTGATACTTTTCATTTAGAAAGTAATGAAATCTTTAGGCTGTTGGATAATTTTCAGAGTTTGGCCATGGATGATGGGAATTGTCTTGCATTATTTGAGTTCAGTAAGTGA 2382 42.95 MNLYVPLFRRSTTLRTLTQLHAHLFVTGLHADPRPSTKLIESYAEMGSLPSSRLVFETFRNPDSFMWGVLVKSYEWNQCFEEAVSLFHKMVYQQIQFNEFVFPSILRACSGFGDMAIGEKVHGRIVKCGFDGDAVVDTSLLSMYGEAGCLDGAWKVFDEMPVRDLVSWSSIILCNVENAEALEGLDVFRRMVSHGVEADSVTMLSVVEACGDVRSLSLAKSVHGYVIRKEIQNDGSLKSSLIVMYTKCDDLRSSESTFAKISQPDTSSWTAMISCYNQAGFSHEALRVFTDMRKSEVEVNSVTLFGILSSCSRLGLFKEGRSVHSFIIRNAIDPPLDFIGPALIELYANSLKISACSRILHVIGDRNILPWNMLISAYAQNQLLEEALVVFVKLNADGLRPDSFSLASSISASGDLGLLHFGQQIHSHTINSGYFPDDYVRNSLIDMYSNCGFVDLAYKIFNEIEWRSVVTWNSMMCGFSQNGYSIEAIKLFDEMYSNCQEMGEITFLSAIKACSLLGHLEKGKWIHHKLITLGLIKHQYIETALTDMYGKCGDLETSQQVFDNMSEKSLVTWSTMIASYGAHGQINTVIELYNQMLDLGIKPNEVTFMNILSACSHAGLVKEGKFYFSSMTEYGIKPKTEHFSCMVDILSRAGELDEAYKIIKSMPFPVDSSIWGALLNGCRIHLKLNMVKTIQRDLFNLSTDDTGYYTLLSNAYAEEGEWNEFHKVRKLMKSTGLKKVPAFSSVEIDSRVHRFGAGDTFHLESNEIFRLLDNFQSLAMDDGNCLALFEFSK 793
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4917669 4920050 - BLOR00445 Blo01g00445 54885

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00445 793 Pfam E motif 697 747 IPR046848 -
Blo01g00445 793 TIGRFAM PPR: pentatricopeptide repeat domain 138 166 IPR002885 -
Blo01g00445 793 TIGRFAM PPR: pentatricopeptide repeat domain 371 402 IPR002885 -
Blo01g00445 793 TIGRFAM PPR: pentatricopeptide repeat domain 571 605 IPR002885 -
Blo01g00445 793 TIGRFAM PPR: pentatricopeptide repeat domain 268 300 IPR002885 -
Blo01g00445 793 TIGRFAM PPR: pentatricopeptide repeat domain 470 498 IPR002885 -
Blo01g00445 793 Pfam PPR repeat 65 91 IPR002885 -
Blo01g00445 793 Pfam PPR repeat 442 467 IPR002885 -
Blo01g00445 793 Pfam PPR repeat 642 666 IPR002885 -
Blo01g00445 793 Pfam PPR repeat 138 163 IPR002885 -
Blo01g00445 793 Pfam PPR repeat 371 398 IPR002885 -
Blo01g00445 793 Pfam PPR repeat 543 568 IPR002885 -
Blo01g00445 793 Pfam PPR repeat 166 196 IPR002885 -
Blo01g00445 793 Gene3D Tetratricopeptide repeat domain 369 544 IPR011990 GO:0005515
Blo01g00445 793 Gene3D Tetratricopeptide repeat domain 7 115 IPR011990 GO:0005515
Blo01g00445 793 Gene3D Tetratricopeptide repeat domain 545 748 IPR011990 GO:0005515
Blo01g00445 793 Pfam PPR repeat family 468 514 IPR002885 -
Blo01g00445 793 Pfam PPR repeat family 569 616 IPR002885 -
Blo01g00445 793 Pfam PPR repeat family 264 310 IPR002885 -
Blo01g00445 793 Gene3D Tetratricopeptide repeat domain 219 339 IPR011990 GO:0005515
Blo01g00445 793 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 604 638 IPR002885 -
Blo01g00445 793 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 367 401 IPR002885 -
Blo01g00445 793 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 133 167 IPR002885 -
Blo01g00445 793 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 395 774 - -
Blo01g00445 793 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 269 400 - -
Blo01g00445 793 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 12 273 - -
Blo01g00445 793 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 395 774 - -
Blo01g00445 793 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 269 400 - -
Blo01g00445 793 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 12 273 - -
Blo01g00445 793 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 569 603 IPR002885 -
Blo01g00445 793 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 299 IPR002885 -
Blo01g00445 793 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 468 498 IPR002885 -
Blo01g00445 793 Gene3D Tetratricopeptide repeat domain 116 218 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00445 - - - qsu:112012233 1048.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00445 Blo-Chr1:4917669 Blo08g00213 Blo-Chr8:2487371 7.99E-36 dispersed
Blo06g00075 Blo-Chr6:2847856 Blo01g00445 Blo-Chr1:4917669 2.22E-131 transposed
Blo01g00445 Blo-Chr1:4917669 Blo06g00922 Blo-Chr6:32470169 4.04E-40 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g77 Blo01g00445 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0918 . . . . . . . . . . . Bpe02g02324 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012959 0 1 1 0 1 1 1 1 1 1 1 1 1 0 1 1 1 3 1 1 1 1 0 1 0 1 0 1 1 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00445 Blo_Chr01 FPKM 8.01198 9.935209 8.054263 7.767205 12.705843 11.648969 12.608829 7.621163 6.800553 7.686162