Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00446 ATGTATAGGACTGTTGCTGCTGCGGCAGCTTCAACCACAACCGCGACGGTGAGCAAAGGAGGATCACCGTCGGATAGTGTGGATTATGTGGTTACTTTGGATCAGGTTCCGCGGTGGAGCGATGCAGAATTTAGATCTTCACTGGAACTTGAAGGTGAAGATGCTTCTTTCTCTAATGCGTACTTTCCTGATCCTTTGACCTCTTTGTTTGGGCCAGAGAGCGGTGTAAATGGAATGGTTTCGAGGTTTCCAGTCGATCATGAAATTAATTCCAAGATATATCTTTGGAGAGGGAATCCATGGAATCTGGAGGTAGATGCTGTGGTCAATTCTACAAATGAGAGTTTGGATGAGGCAAACAGCAGCACAGGATTGCACTCTGCCGCTGGATCTGGTCTTGCCGAAGAATGTGCTTCCATGGGTGGTTGTCGGACGGGGATGGCAAAAGTAACTAATGCATATGACCTTCCGGCTAGGAAGGTCATACATACCGTTGGTCCAAAGTATGCAGTAAAATATCATACTGCAGCTGAGAATGCTTTAAGTCATTGTTATCGATCTTGCCTCGAACTTCTTATTGAAAATGGACTTCAAAGGTTGCTTCCCCTTTACTTTCCACGTGATAAACACGAAGAGGAAATTGCCATATCAAAGCTTCCTGCAGATGTAGGAGATGAGAATGGCGAGACTATCATTGATGAACGAAAGATCAGGATAAAGCCTTTGCCAAAAAAGAATATTCCCAAACCTCCCCAAACTCCTGATGATCCTCCTATTAGTAGTGTTGGCTTGGCACGAAGGAGTTCTTCGTATTTGGATTCATATTTGGATCCTGCTTTTATGTCCTTAATCAAAGACCCAGATCAGAGACGCAGAGAGCAATGGGAAAAAACTGCGCAGGCGCAGAGTGGATGGAATTGTGCTAAGATGCTTGGATTTGGTGATCTTGGTGGACCTCCGCTATCTGCCGCTGAAGAATACTCACTTCATTCAAGATATCTTGCTAAAGCAAATTCTCTAAACTTGTCTGAAATTGCAGAAATGAAAATAATTTATCGTGGTGGGGTTGATAGTGAGGGTCATCCGGTAATGGTTGTTGTGGGAGCACATTTTCTGCTGCGTTGCCTTGATCTGGATCGTTTTGTTCTTTATGTCATAAAGGAATTTGAGCCATTGATACAGAAGCCTTATACAATTGTCTACTTCCATTCAGCAGCATCTTTACAGCCCTGTATTGACTACCTGTTTCTGGAAAAAAACAGCCGGCCTGACATGGGATGGATGAGAAGACTACAACAAATACTCGGCCGCAAACACCAGCGTAATCTTCACGCGATCTATGTTCTTCATCCATCGTTTGGACTAAAGGCTACAATTTTTGCTATGCAACTGTTCGTAGACAATTTGGTATGGAACAAAGTCGTGTACGTCGATAGGCTTCTGCAGTTGTTTAGATACGTTCCTCCACAGCTGAGGCTTCATGGTTTATTGCTTTTAGTTGTTGCTTCAACAACTTGGGTATTGCTTACAGACCATAATCTGAACAAGAAGACTCTTCGAATAACCTCTGGTTTCTCTGTTTTGCGAAATCAGTGGAGGTTACGGCAGAGCAATCAGCAGGAGGTGGAAATGAATCGTCCAGCGGTGCCTTAG 1653 43.92 MYRTVAAAAASTTTATVSKGGSPSDSVDYVVTLDQVPRWSDAEFRSSLELEGEDASFSNAYFPDPLTSLFGPESGVNGMVSRFPVDHEINSKIYLWRGNPWNLEVDAVVNSTNESLDEANSSTGLHSAAGSGLAEECASMGGCRTGMAKVTNAYDLPARKVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLQRLLPLYFPRDKHEEEIAISKLPADVGDENGETIIDERKIRIKPLPKKNIPKPPQTPDDPPISSVGLARRSSSYLDSYLDPAFMSLIKDPDQRRREQWEKTAQAQSGWNCAKMLGFGDLGGPPLSAAEEYSLHSRYLAKANSLNLSEIAEMKIIYRGGVDSEGHPVMVVVGAHFLLRCLDLDRFVLYVIKEFEPLIQKPYTIVYFHSAASLQPCIDYLFLEKNSRPDMGWMRRLQQILGRKHQRNLHAIYVLHPSFGLKATIFAMQLFVDNLVWNKVVYVDRLLQLFRYVPPQLRLHGLLLLVVASTTWVLLTDHNLNKKTLRITSGFSVLRNQWRLRQSNQQEVEMNRPAVP 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4921222 4927156 - BLOR00446 Blo01g00446 54886

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00446 550 SUPERFAMILY Macro domain-like 79 199 IPR043472 -
Blo01g00446 550 CDD SEC14 348 489 IPR001251 -
Blo01g00446 550 PANTHER APPR-1-P PROCESSING ENZYME FAMILY PROTEIN 11 199 - -
Blo01g00446 550 Pfam Divergent CRAL/TRIO domain 360 489 IPR001251 -
Blo01g00446 550 PANTHER APPR-1-P PROCESSING ENZYME FAMILY PROTEIN 198 493 - -
Blo01g00446 550 ProSiteProfiles Macro domain profile. 80 280 IPR002589 -
Blo01g00446 550 SMART YBR022w_8 92 214 IPR002589 -
Blo01g00446 550 Gene3D Leucine Aminopeptidase, subunit E, domain 1 22 208 IPR043472 -
Blo01g00446 550 Pfam Macro domain 109 220 IPR002589 -
Blo01g00446 550 SUPERFAMILY CRAL/TRIO domain 342 489 IPR036865 -
Blo01g00446 550 Gene3D - 340 493 IPR036865 -
Blo01g00446 550 PANTHER GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED 198 493 - -
Blo01g00446 550 MobiDBLite consensus disorder prediction 241 263 - -
Blo01g00446 550 SMART sec14_4 341 498 IPR001251 -
Blo01g00446 550 PANTHER GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED 11 199 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00446 K24997 GDAP2; ganglioside-induced differentiation-associated protein 2 - zju:107428894 749.969
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g00446 Blo16g01097 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00446 Blo-Chr1:4921222 Blo04g00188 Blo-Chr4:1520077 2.81E-11 dispersed
Blo01g00446 Blo-Chr1:4921222 Blo16g01097 Blo-Chr16:39453575 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g75 Blo01g00446 Blo16g01097 Bda01g02135 Bda11g01188 Bpe13g01386 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0547 Cone9ag0558 . . . . . . . Bda11g01188 . . Bma01g00115 Bma06g00726 . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01744 Chy09g00682 Cme09g00680
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003700 3 2 2 2 1 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 3 1 1 3 2 1 46