Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00454 ATGAAATGTCATCTTCTTCTCTCTGGAGCTCTTATTTTCTTGAGTTCCCTCTTTCTGTGTTGCGATTTTGGTTTTGTTTCAGCAGAAGTGGTTTCTGAGAAATCTGTTTTACTGGAGTTTAAGCGGTGTGTTTCCGACCCATCTGGAATTCTCTCAAGCTGGGATGGTAAAGACTCTGATTACTGTTCTTGGTATGGTATTTCCTGCGACTCCAATTTTAAGGTTTCCTCGCTGAATATAAGTGGGGTTACTGGGTTCGGAGGTAATTCTCAAACTTCTTCTAGTCCTTATTTTTCTCGGATTCAGTATCATAGATTTGGAAATGGAAGAATTTGTTCGCCTGGTGGTGCTAAATTAGTTGGTAGATTGCCTTCGATAATTGGAAAACTTACTGAACTCAGGGTTGTATCACTTCCTTGTAATGATCTTAGAGGTGAAATCCCTTCAGAAATTTTTGGTTTAGAAAAACTAACAGTGCTTGATCTTGAGGGAAATTCACTCACGGGAAGATTTCCGGATCAATTCGAAGGTTTAAGAACGTTGCGGGTTTGGAATCTTGCACTAAATCGGATTTCCGGGGAAGTTCCTTCTTCAATTTCAATATGTGTGGATCTGGAAGTTCTAAATTTAGCTGGTAATAGATTCAACGGGTCCGTGCCAACATTTTTGGGCAATTTTCCAAAGTTAAAGAGGCTTTATTTGTCGCAAAATAGGTTAAGTGGATACTTTCCAGCCGAGTTTCCGAAGAGTTGTTCGAGTCTCGAGTACCTTGATTTGTCGGGAAATTTTCTAGCTGGAAGTATACCAAGTTGGCTGGGCAAGTGTAAGCACTTAAAGGAACTTTTGTTGTTTTCCAACAAGTTGAAAGGTGCCATTCCTAACGAGCTAGGACAGCTTCAGATGCTTGAAGTTCTAGACGTTGCTAGAAACAGTCTCAACGGCTCAATCCCGGTGGATCTCAAGCAATGCTCAAAATTATCGGTTCTTGTCCTCTCCGATCTTTTTAATCCATACGCGTATCATAATTCTGTCGAACACAATTATTTTGAAGGCTCTATTCCTGAAGCAGTTACTAGTCTTCCAAAGTTAAGGATAGTTTGGGCTCCGGGGGCGAATCTCGAAGGGAAGTTTCCGGGAGATTGGGGTGATTGTGAGAATATGGAAATGGTTAACTTAGCTCAGAATCGTTTAAATGGGGAAATATTCAACATGTTTCGGCAGTGTAAGAAGTTACATTATCTTGATTTAAGTTCGAATAAGATTTCTGGAAAGCTGGACGAAGAACTTCATCCGGAAAGGCTTGTAAAGGTTAGCTTCGATAAATTCACTGGTCGTATTCCAGTGGAGTTGCATACAATTTGCAGATCTCTTCAATTCTTGAACATCTCTGGTAATCGAATTTCTGGGTCCATACCTGCGAGTTTTGGCAGTTGGAAATCACTTGTTGTTCTTGACTCGAGTCGAAACATGATTGAAGGTCACATTCCTCCTGAGATTGGTCTTCTGAAGCATCTCAAATATCTCTCACTAGCTGGAAACAATCTGACGGGTGAGATCCCCTCGAGCTTCACATGGCTAAACTCCCTCCAAGTGTTAGACCTCTCTTCAAATGAGATTTATGGGGAGATCCCCCAAGGTTTGGTGCACTTGACAAAATTAAAGGCTCTATTGCTCAACAACAACAAACTTTTGGGGAAGATTCCTTCGGGTTTGTTTCGGCCGACGCTATCTTTGTTTAACGTATCATTTACTAACCTCTCTGGTTCTTCTCTGTCGAAAAACGGCTCGATTGACCGCACTTGTGTTCTTGGCAAGCATTGCGACTTCTATCCCCATTTTGTTTCCCTGGCTGCATCATCTCAAGCTGTGCCGAATGTCAGCCAAAACTCAGGAACTAACCAGTCAGCTGTGTCGGAAAATGACAGTGCCACTCCAAATAATGGTCTGAATTCTATCGAAATTGCAGCTATAGCGTCTGCATCAGTAGTTGTTTCAGTTTTCTTAGCTCTCCTTATCCTCTTCTTTTATACGAGAAAACAGGTCCCCCATTCAAGGGTTCGGGTATCCGAATCAAGAGAAATTACAGTTTTTGTTGACATTGGAGCTCCATTGACTTTCGAGGCAATCGTCAAAGCGACCGGAAATTTCAGTAATGCCAACTGCATTGGAAATGGAGGATTTGGAGCAACCTATAAAGCTGAAATTCATCCTGGAACATTGATTGCGGTCAAAAAACTATCTGTCGGACGGTGCCATGGCATTCAACAATTCGATGCAGAGATTAAGATTCTCGAAAAGTTGCGACACCCTAATCTTGTAACCTTGATAGGTTACCATGCCAGTGATTCTGAGATGTTACTTATTTATAATTACTTGCCGGGTGGTAATCTGGAGAAGTTCATAAAAGATCGATCGGCTAAAGCCGTCGATTGGAAGATTCTTCACAAGATCGCTTTAGACATAGCCATGGCACTTGCTTATCTACACGACCATTGTGTTCCGAGGGTCCTCCACCGTGATGTCAAACCAAGTAACATATTGCTCGATAACTACTTAAATGCGTATTTATCTGATTTTGGTTTATCGAGGCTTTTGGGAACTTCTGAATCGCATGCAACAACTGGTGTAGCCGGAACGTTCGGTTATGTGGCCCCGGAGTATGCTTTGACCTGTCGGCTATCCGAGAAAGCTGATGTTTACAGCTATGGTGTGGTTTTGCTCGAACTAATATCGGACAAAAGAGCATTGGATCCTTCCTTTTCAGCCCATGTAAATGGTTTCAATATCGTTTCGTGGGCCCGCATGCAGTTAGGACTGGGACGTGCGAAAGAAGTGTTCACTGTCGGGCTGTGGGATTCGACTCCGCACAATGATTTGGTCTTGATGCTTCACTTAGCCATCACGTGCACGGATGAAACACTCTCGACTAGGCCCACAATGAAGCAAGTTCTCCGGAGATTGATGCAGATTCAACCACTTTCTCAGTAG 2988 42.6 MKCHLLLSGALIFLSSLFLCCDFGFVSAEVVSEKSVLLEFKRCVSDPSGILSSWDGKDSDYCSWYGISCDSNFKVSSLNISGVTGFGGNSQTSSSPYFSRIQYHRFGNGRICSPGGAKLVGRLPSIIGKLTELRVVSLPCNDLRGEIPSEIFGLEKLTVLDLEGNSLTGRFPDQFEGLRTLRVWNLALNRISGEVPSSISICVDLEVLNLAGNRFNGSVPTFLGNFPKLKRLYLSQNRLSGYFPAEFPKSCSSLEYLDLSGNFLAGSIPSWLGKCKHLKELLLFSNKLKGAIPNELGQLQMLEVLDVARNSLNGSIPVDLKQCSKLSVLVLSDLFNPYAYHNSVEHNYFEGSIPEAVTSLPKLRIVWAPGANLEGKFPGDWGDCENMEMVNLAQNRLNGEIFNMFRQCKKLHYLDLSSNKISGKLDEELHPERLVKVSFDKFTGRIPVELHTICRSLQFLNISGNRISGSIPASFGSWKSLVVLDSSRNMIEGHIPPEIGLLKHLKYLSLAGNNLTGEIPSSFTWLNSLQVLDLSSNEIYGEIPQGLVHLTKLKALLLNNNKLLGKIPSGLFRPTLSLFNVSFTNLSGSSLSKNGSIDRTCVLGKHCDFYPHFVSLAASSQAVPNVSQNSGTNQSAVSENDSATPNNGLNSIEIAAIASASVVVSVFLALLILFFYTRKQVPHSRVRVSESREITVFVDIGAPLTFEAIVKATGNFSNANCIGNGGFGATYKAEIHPGTLIAVKKLSVGRCHGIQQFDAEIKILEKLRHPNLVTLIGYHASDSEMLLIYNYLPGGNLEKFIKDRSAKAVDWKILHKIALDIAMALAYLHDHCVPRVLHRDVKPSNILLDNYLNAYLSDFGLSRLLGTSESHATTGVAGTFGYVAPEYALTCRLSEKADVYSYGVVLLELISDKRALDPSFSAHVNGFNIVSWARMQLGLGRAKEVFTVGLWDSTPHNDLVLMLHLAITCTDETLSTRPTMKQVLRRLMQIQPLSQ 995
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5026821 5029808 + BLOR00454 Blo01g00454 54894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00454 995 Gene3D Ribonuclease Inhibitor 340 603 IPR032675 -
Blo01g00454 995 Gene3D Ribonuclease Inhibitor 116 333 IPR032675 -
Blo01g00454 995 ProSiteProfiles Protein kinase domain profile. 716 995 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo01g00454 995 Pfam Leucine Rich repeat 407 423 IPR001611 GO:0005515
Blo01g00454 995 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 11 425 - -
Blo01g00454 995 Gene3D Transferase(Phosphotransferase) domain 1 792 992 - -
Blo01g00454 995 SMART LRR_sd22_2 154 180 - -
Blo01g00454 995 SMART LRR_sd22_2 408 431 - -
Blo01g00454 995 SMART LRR_sd22_2 526 549 - -
Blo01g00454 995 SMART LRR_sd22_2 226 259 - -
Blo01g00454 995 Gene3D Ribonuclease Inhibitor 27 115 IPR032675 -
Blo01g00454 995 Pfam Leucine Rich Repeat 456 476 IPR001611 GO:0005515
Blo01g00454 995 SMART serkin_6 716 988 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo01g00454 995 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RPK2 11 425 - -
Blo01g00454 995 SUPERFAMILY Protein kinase-like (PK-like) 694 989 IPR011009 -
Blo01g00454 995 Gene3D Phosphorylase Kinase; domain 1 678 791 - -
Blo01g00454 995 Pfam Leucine rich repeat N-terminal domain 33 70 IPR013210 -
Blo01g00454 995 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 434 994 - -
Blo01g00454 995 Pfam Protein kinase domain 719 985 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo01g00454 995 PRINTS Leucine-rich repeat signature 411 424 - -
Blo01g00454 995 PRINTS Leucine-rich repeat signature 526 539 - -
Blo01g00454 995 SMART LRR_typ_2 299 323 IPR003591 -
Blo01g00454 995 SMART LRR_typ_2 526 549 IPR003591 -
Blo01g00454 995 SMART LRR_typ_2 154 177 IPR003591 -
Blo01g00454 995 SMART LRR_typ_2 251 275 IPR003591 -
Blo01g00454 995 SMART LRR_typ_2 226 249 IPR003591 -
Blo01g00454 995 SMART LRR_typ_2 550 574 IPR003591 -
Blo01g00454 995 SMART LRR_typ_2 502 525 IPR003591 -
Blo01g00454 995 ProSitePatterns Protein kinases ATP-binding region signature. 722 745 IPR017441 GO:0005524
Blo01g00454 995 Pfam Leucine rich repeat 227 288 IPR001611 GO:0005515
Blo01g00454 995 Pfam Leucine rich repeat 504 563 IPR001611 GO:0005515
Blo01g00454 995 Pfam Leucine rich repeat 132 191 IPR001611 GO:0005515
Blo01g00454 995 ProSitePatterns Serine/Threonine protein kinases active-site signature. 836 848 IPR008271 GO:0004672|GO:0006468
Blo01g00454 995 CDD STKc_IRAK 722 990 - -
Blo01g00454 995 SUPERFAMILY L domain-like 30 334 - -
Blo01g00454 995 SUPERFAMILY L domain-like 345 584 - -
Blo01g00454 995 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RPK2 434 994 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00454 Blo-Chr1:5026821 Blo10g00156 Blo-Chr10:1816917 0 dispersed
Blo01g00454 Blo-Chr1:5026821 Blo11g00552 Blo-Chr11:5190396 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84080 PF00069 Pkinase 7.90E-44 CL0016 Blo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00454 - - sind:105179820 873.618