Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00461 ATGGGGAGGGGTAGGGTTCAGCTGAAACGAATAGAAAACAAAATCAATCGGCAAGTTACTTTTTCGAAAAGGAAAGGTGGGTTACTGAAGAAAGCTCATGAAATCTCTGTACTTTGTGATGCTGAGGTTGCTTTGATCGTCTTCTCCGACAAAGGAAAGCTCTTTGAATACGCTACAGATTCTAGCATGGAGATGATACTTGAACGTTATGAGAGATATTCCTGTGCAGATAGGCCGTTCTCTGCAACTCAATCTGAGCCGCAGGGTAACTGGATCGTTGAGTATTCAAGGCTAAAAGCTAAGATTGAGCTCTTAGAGAGAAAACACAGCCACTATCGGGGAGAAGATTTGAATTTGTTGAGTCTCAAAGAACTTCAAAGCCTGGAGCAACAGCTTGACACTGCTCTTAAACATATTCGCACTAGAAAAGAAAAGGCAATACAGGAACAGAACAGTTTGTTAGCAAAGCAGATCAAGGAGAGGGAGAAGATTATGGCGCAGCAGCAAATCCATGGCGCTCATGCTTCAACCGACTTGCTCACACACGCACTCCCTAATTTAATTCTAGGTGGGAGATCTCAGGAACAGATGGCAGAAGAAATGAGGAGAAAGGGGCTTGAACTGACCCTTGAACCTGTTTATTCATGTCGTCTTTGA 657 43.53 MGRGRVQLKRIENKINRQVTFSKRKGGLLKKAHEISVLCDAEVALIVFSDKGKLFEYATDSSMEMILERYERYSCADRPFSATQSEPQGNWIVEYSRLKAKIELLERKHSHYRGEDLNLLSLKELQSLEQQLDTALKHIRTRKEKAIQEQNSLLAKQIKEREKIMAQQQIHGAHASTDLLTHALPNLILGGRSQEQMAEEMRRKGLELTLEPVYSCRL 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5098214 5105922 + BLOR00461 Blo01g00461 54901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00461 218 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Blo01g00461 218 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Blo01g00461 218 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Blo01g00461 218 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Blo01g00461 218 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Blo01g00461 218 ProSiteProfiles K-box domain profile. 88 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Blo01g00461 218 Pfam K-box region 84 163 IPR002487 GO:0003700|GO:0005634|GO:0006355
Blo01g00461 218 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677|GO:0046983
Blo01g00461 218 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Blo01g00461 218 Coils Coil 95 115 - -
Blo01g00461 218 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A 1 201 - -
Blo01g00461 218 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 201 - -
Blo01g00461 218 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Blo01g00461 218 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Blo01g00461 218 Coils Coil 125 145 - -
Blo01g00461 218 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00461 Blo-Chr1:5098214 Blo06g00941 Blo-Chr6:32637827 4.48E-80 dispersed
Blo18g00414 Blo-Chr18:4509735 Blo01g00461 Blo-Chr1:5098214 3.51E-44 dispersed
Blo01g00461 Blo-Chr1:5098214 Blo11g00805 Blo-Chr11:12765549 2.52E-81 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11845 PF01486 K-box 3.20E-18 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00461 K09264 - tcc:18610206 286.189