Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00483 AGAGTAATGAGTTGGAGGAGAATTGCCGAGTCCTTTCAGGCGCTTTTGGCTCATGCTTTGCTGTTCTCATGCACACTTCTTCTAGCTTTTAAGCTCGATCATGCTGTTTTGTACTCTTGGTGGATGGTATTTGCCCCTTTGTGGCTTTTTCATGCAGTTGTGGCTCGAGGCAGATTTTCTCTTCCTGCTCCGACATTACCTCATGATCGCTATTGGGCACCGTGGCATGCTGTCATGGCTATACCATTGCTTGTTGCTTTCGAACTACTTCTTTGCATTCATCTAGTAACTGGATTTACTGCAGTTGTAAACTTGAAGATTGTTTTCATTCCTCTGTTGGTCTTTGAGATAGCAATTTTGATCGATAATGTCAGGATGTGCAAGGCTTTGATGCCTGGAGAGGAGGAAACTATCAGTGAAGAAATAATATGGAAGACACTCCCCCATTTCTGGGTTGCAATTTCTATGGTTTTCTTCATTGCTGCTACAATCTTCACTTTTTTGAAGCTAAGTGGAAATGCAGCTTCTCTAGGCTGGTGGGACTTATTTATAAACTTTGGATTGCTTGGTTGGTGGTCAATTGATGAAGGAAGTCGAGAGGAACAAGCTAAACTTTATTGCGGTGGATCTTCTGGGTATAATACTTTCTCACCGGAGGCTGTGAAGCAAATGCCAAAGTCTAATCTCATTGAGGAGATTTGGAGATTACAAGCTGCTCTCAGTGAACAAACTGAAATTACTAAGTTTAGTCAGCAGGAGCATGAAAGACTACAAAATGAAAAAATCCTTTGTCGAATATGCTTTGTAGAGGAGATTAATGTGGTCCTCCTTCCATGTCGGCATCACATTCTTTGCAGCACTTGCTGCGACAAGTGCACAAGGTGCCCGATTTGCCGAGAGTCGATTGAAAGAGGAATGCTTGTACATGATGTATAG 936 42.41 RVMSWRRIAESFQALLAHALLFSCTLLLAFKLDHAVLYSWWMVFAPLWLFHAVVARGRFSLPAPTLPHDRYWAPWHAVMAIPLLVAFELLLCIHLVTGFTAVVNLKIVFIPLLVFEIAILIDNVRMCKALMPGEEETISEEIIWKTLPHFWVAISMVFFIAATIFTFLKLSGNAASLGWWDLFINFGLLGWWSIDEGSREEQAKLYCGGSSGYNTFSPEAVKQMPKSNLIEEIWRLQAALSEQTEITKFSQQEHERLQNEKILCRICFVEEINVVLLPCRHHILCSTCCDKCTRCPICRESIERGMLVHDV 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5289001 5294766 + BLOR00483 Blo01g00483 54923

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00483 311 Pfam Zinc finger, C3HC4 type (RING finger) 262 304 - -
Blo01g00483 311 Pfam Transmembrane Fragile-X-F protein 31 186 IPR019396 -
Blo01g00483 311 SUPERFAMILY RING/U-box 255 303 - -
Blo01g00483 311 ProSiteProfiles Zinc finger RING-type profile. 264 299 IPR001841 -
Blo01g00483 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 238 308 IPR013083 -
Blo01g00483 311 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 188 311 - -
Blo01g00483 311 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 3 187 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00483 - - - nta:107761150 400.208
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00483 Blo-Chr1:5289001 Blo13g00539 Blo-Chr13:27246059 5.13E-08 dispersed
Blo05g00232 Blo-Chr5:2549541 Blo01g00483 Blo-Chr1:5289001 2.49E-06 transposed
Blo01g00483 Blo-Chr1:5289001 Blo15g00366 Blo-Chr15:4879591 3.11E-27 wgd
Blo01g00483 Blo-Chr1:5289001 Blo06g01191 Blo-Chr6:35375507 1.39E-28 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g256 Blo01g00483 . Bda01g02099 . . . . . . . . . . . . . Cpe01g01761 . . . . . . . . . . . . . . . . Cone6ag0474 Cone9ag0487 . . . . . . . . . Bpe02g02288 Bma01g00153 . . . . Cma04g02006 . . . . Cpe04g01416 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002572 3 4 3 2 3 1 3 1 0 0 1 1 3 1 1 3 1 3 3 0 1 3 2 2 2 0 2 3 5 2 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00483 Blo_Chr01 FPKM 21.893101 23.544178 37.720345 42.237492 38.705215 36.957279 39.805569 51.45977 52.660423 52.843731