Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00484 ATGATAAATGACAGAGCAGTGATGGAGAAAATACTAAAAGATTATAAGATTGATGTAGTAATATCTGCAGTGGGTGGGGGGAAAATTCTGGACCAGATTCCTCTCATAGAAGCAATAAAATCCGTCGGCACCGTTAAGAGATTTCTTCCGTCGGAATTCGGACATGACGTCGATCGCGCCGATCCGGTGGAGCCCGGACTAGAAATGTACAACGCGAAACGTAGAGTCCGGCGAATGATCGAAGAACAAGGAATTCCGTACACATACGTTTGCTGCAACTCCATAGCCTCCTGGCCTTACTTCGACAACACTCACCCGTCGGAGGTTCTTCCCCCTTTGGATCAGTTTCAAATCTACGGCGATGGTTCCATCATGTTATTCACTCTTTTCTTTGGTACAGCCTACTTCGTCGCCGGAACTGACATCGGAAAATTCACGATGAGAATCATCGACGACGACCGGACTTTGAACAAAAGCGTTCATTTTCGGCCCCAGTGCAATTTATATAACATGAACCAGCTTGCGTCCTTGTGGGAGAAGAAAATTGGAAGAACACTTCCGAGAATAACAGTGACCGAAGACGATCTCCTCGCAGCCGCTGCAGAGAATATAATACCAGAGAGTATAGTGGCGTCATTCACACACGATATATTCATAAAAGGGTGTCAAATAAATTACTCGTGCGACCAAGATCGAGATCTGGAGGTGTGCAATCTGTACCCAGATGAGGTTTTCAAGACAGTGGACGAGTGCTTCACTGATTTTGCTCTGCAATTGAATGGAAATGAAACGAAGCAAAGCAAGAATGACAAGGCAATTGCCGTCACCAACGCTGTGGTCGAGCCTCTCCCAGTCACTGCAACTTGTGCTTGA 873 46.16 MINDRAVMEKILKDYKIDVVISAVGGGKILDQIPLIEAIKSVGTVKRFLPSEFGHDVDRADPVEPGLEMYNAKRRVRRMIEEQGIPYTYVCCNSIASWPYFDNTHPSEVLPPLDQFQIYGDGSIMLFTLFFGTAYFVAGTDIGKFTMRIIDDDRTLNKSVHFRPQCNLYNMNQLASLWEKKIGRTLPRITVTEDDLLAAAAENIIPESIVASFTHDIFIKGCQINYSCDQDRDLEVCNLYPDEVFKTVDECFTDFALQLNGNETKQSKNDKAIAVTNAVVEPLPVTATCA 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5295632 5297243 - BLOR00484 Blo01g00484 54924

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00484 290 Gene3D - 2 242 - -
Blo01g00484 290 Gene3D - 94 252 - -
Blo01g00484 290 PANTHER LEUCANTHOCYANIDIN REDUCTASE 2 264 - -
Blo01g00484 290 PANTHER PINORESINOL REDUCTASE-RELATED 2 264 - -
Blo01g00484 290 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 14 200 IPR036291 -
Blo01g00484 290 Pfam NmrA-like family 2 185 IPR008030 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00484 K13081 LAR; leucoanthocyanidin reductase [EC:1.17.1.3] - rcu:8269513 426.402
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g00484 Blo16g01051 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00484 Blo-Chr1:5295632 Blo17g00792 Blo-Chr17:25281445 3.92E-45 dispersed
Blo01g01025 Blo-Chr1:31610027 Blo01g00484 Blo-Chr1:5295632 1.84E-53 transposed
Blo01g00484 Blo-Chr1:5295632 Blo16g01051 Blo-Chr16:39008208 1.58E-176 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g257 Blo01g00484 Blo16g01051 Bda01g02098 . Bpe13g01329 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0473 Cone9ag0486 . . . . . . . . . Bpe02g02287 . Bma06g00771 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015267 1 0 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 2 12
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00484 Blo_Chr01 FPKM 16.994806 18.510496 18.693106 17.737915 21.361998 23.026093 21.891169 38.405479 39.493217 38.631195