Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00485 ATGGCTATTGTTGCAGCAGGAGGAGTAGGTCTGGATGTGACCAAGCTTCAACCTCATCGGTCGCAACTCGCTACCCCATTTCTCGGTAAGAAGTTTAGAATCAAACCCAACTTCGATTTACGTCCAAATTCGAGAATCGATGCCTCTGCTCTGAGAAAATCCCTTGTTTTGGCTTCGGGAGGGGGGCTAATCGATGCGATTCATGGCCTTTTTCTGGGTGTTGGGGTGGGGCTTCCTTGCACGGTTATGGAGTGCGGTGATATTATCTACAGAAGCACTCTGCCGAAGCCCAGCGGCTTAACACTCACAATTCCTGGTGCTATTCTTGCTCTTGGCACTATTTCTTATCTCTGGGCAACTCCTGGTGTTGCTCCCGGCTTTTTTGATATGTTCGTTCTTGCATTTGTGGAAAGACTTGTTAGACCCACTTTTAAAAAGGAAGATTTTGTTTTGGGGAAGAAGTTGGGAGAGGGAGCTTTTGGTGTGGTTTATAGAGTTTCGTTAGCAAAGAAGCCTTCCGACAAGAAAGAAGGCGATTTAGTGCTGAAGAGGGCTACCGAGTATGGTGCAGTTGAGATTTGGATGAATGAGCGAGCCCGAAGAGCTTGCGCAAATAGTTGTGCAGATTTTGTTTATGGCTTTCTTGAGGGCTCTTCCAAAAAAGGATCCGAATATTGGCTCATTTGGCGGTTCGAAGGGGAAGCCACTTTGGCTGATTTGATTCAAAGCAAAGATTTCCCTTACAATGTAGAGACTATGATTGTTGGTGAAGCTCAAGACTTGCCTAAGGGGTTGGAAAGAGAGAACAAAATCATTCAGACCATCATGAGACAGCTCTTGTTCGCATTGGACAGTCTTCATTCGGTCGGAATTGTTCATCGTGATATAAAGCCACAAAATGTCATTTTCTCTGAGGCAGGGTCTCGTACTTTCAAAATCATCGATCTCGGAGCTGCAACTGATTTAAGAGTAGGCATTAACTATATTCCGAAGGAATTTCTTCTGGATCCGAGATATGCCGCCCCTGAGCAATACATTATGAGTACACAAACCCCATCTGCTCCATCAGCACCTGTTGCAACTGCACTTTCTCCTGTCCTTTGGCAGATGAATCTTCCTGATAGATTCGACATCTATAGTGCCGGTCTCATCTTCTTGCAAATGGCATTTCCCGGATTACGAACAGACAACAGTCTCATACAATTCAACAGGCAATTGAAGAGGTGTGATTATGACTTGGTAGAATGGAGGAAAGGCGTGGAAGCTCGGGCCAGCCCGGAACTCCGGAAAGGATTCGAATTGCTCGATTTAGATGGAGGAATTGGGTGGGAACTTTTGACATCAATGGTTCGATATAAGGCTAGACAAAGAACCAGTGCAAAGGCAGCTTTGGCTCATCCATATTTCGACCGAGAAGGCCTTCTGGCATTATCGTTTATGCAGAAACTCAGACGACAAATTTTTCGAGCAACTCAGCAGGATTATAGTGAAGCTGTCAGCTGGGTTGTCAGGTTGATGGCTAAATCAGGAACTGAGCAAGTCGGTGGCTTCACTGAAGCTCAGCTTCAACAGCTCAGATGTTTTAAAACATTACAGTTGCAGGAAATGGAGCCGAAGAAGAAAGCAAGTGCTCAGAGAAATGCTCTTGCTTCAGTCCTTAAGCTTCAGAGGAAGATCATAAAGACGATAAACGAGAGCATGGACGAGCTCAATCGACCCAGAAAGAATCTATGGTGGAGAAGGTGGATTCCAAGAGAAGAATAA 1764 45.29 MAIVAAGGVGLDVTKLQPHRSQLATPFLGKKFRIKPNFDLRPNSRIDASALRKSLVLASGGGLIDAIHGLFLGVGVGLPCTVMECGDIIYRSTLPKPSGLTLTIPGAILALGTISYLWATPGVAPGFFDMFVLAFVERLVRPTFKKEDFVLGKKLGEGAFGVVYRVSLAKKPSDKKEGDLVLKRATEYGAVEIWMNERARRACANSCADFVYGFLEGSSKKGSEYWLIWRFEGEATLADLIQSKDFPYNVETMIVGEAQDLPKGLERENKIIQTIMRQLLFALDSLHSVGIVHRDIKPQNVIFSEAGSRTFKIIDLGAATDLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQMNLPDRFDIYSAGLIFLQMAFPGLRTDNSLIQFNRQLKRCDYDLVEWRKGVEARASPELRKGFELLDLDGGIGWELLTSMVRYKARQRTSAKAALAHPYFDREGLLALSFMQKLRRQIFRATQQDYSEAVSWVVRLMAKSGTEQVGGFTEAQLQQLRCFKTLQLQEMEPKKKASAQRNALASVLKLQRKIIKTINESMDELNRPRKNLWWRRWIPREE 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5329380 5332345 - BLOR00485 Blo01g00485 54925

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00485 587 Gene3D Phosphorylase Kinase; domain 1 135 230 - -
Blo01g00485 587 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 18 587 IPR044803 GO:0004674|GO:0009579
Blo01g00485 587 Pfam Protein kinase domain 151 469 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo01g00485 587 ProSitePatterns Protein kinases ATP-binding region signature. 155 183 IPR017441 GO:0005524
Blo01g00485 587 ProSiteProfiles Protein kinase domain profile. 149 469 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo01g00485 587 SUPERFAMILY Protein kinase-like (PK-like) 145 476 IPR011009 -
Blo01g00485 587 CDD STKc_SNT7_plant 153 469 - -
Blo01g00485 587 SMART serkin_6 149 469 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo01g00485 587 Gene3D Transferase(Phosphotransferase) domain 1 256 473 - -
Blo01g00485 587 PANTHER SERINE/THREONINE-PROTEIN KINASE STN7, CHLOROPLASTIC 18 587 - -
Blo01g00485 587 ProSitePatterns Serine/Threonine protein kinases active-site signature. 291 303 IPR008271 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00485 - - - qsu:111999120 924.85
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g00485 Blo16g01053 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00485 Blo-Chr1:5329380 Blo01g01649 Blo-Chr1:56285026 1.57E-12 dispersed
Blo01g01019 Blo-Chr1:31326311 Blo01g00485 Blo-Chr1:5329380 2.92E-96 transposed
Blo01g00485 Blo-Chr1:5329380 Blo16g01053 Blo-Chr16:39048920 5.08E-33 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g261 Blo01g00485 Blo16g01053 Bda01g02095 . . . . . . . . . . . . . Cpe01g01762 . . . . . . . . . . . . . . Cone13ag0856 Cone19ag0856 . . . . . . . . . . . Bpe02g02285 Bma01g00154 . . . . Cma04g02007 . . . . . Bhi12g01376 . . . . . . . . . . . . . . Csa05g01509 . Cme09g00814
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010559 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84083 PF00069 Pkinase 4.60E-21 CL0016 Blo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00485 Blo_Chr01 FPKM 50.577175 50.504677 52.659607 53.29237 65.488441 71.229446 70.144257 83.909912 86.026543 94.240822