Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00489 ATGGGTGTTGATTATTCTGAGAAAATTCAGGGAATGGCTGGGGAGATGGGTTTCAAACAGTATGTAGAGGCGTTAAAGGAAGAACGCCGGAAAATTACGGTTTTCCAGCGGGAACTGCCCCTCTGTTTAGAACTTATCACTCAAGCGATTGAGTCTTGTACGCGGCAGTTGTCAGGGACGACGACGGAGTGTTTTAATGGAGGACAATCTGAGTGCTCGGAGCAGACTTCCAGTGAAGGTCCGGTGTTGGAGGAATTTATTCCGGTCAAAAGGGCTCTATCTTCTGAGTTCTCCGACGAAGAGAAAAAATCCCTGAAAATGAGAAAGGAGAGTAAGAATAGCGACAAGAAGAAAGCTGGTCAGTCGGATTGGCTCAAATCTGCTCAGTTATGGAATCAAGCTCCAGATCCTGACGTTAAGGAGGATGCACCGAACAAGACGGCGGTTGTGGAAGTGAAGAGAAATGGCGGAGCTTTCCGGCCATTCCACAGAGAGAAACTCAGCGGAAAGACAAACCAACTCGACGGAAAAGCGCCGACGGTGAATGCAACTTCAACGGCGGAAACATCTTCTCACAGCAGCCTCAGACCAGAAGAGAAAGAGGAACAGGGTAAAAGAAAGATCCGGCGATGCTGGTCACCGGAGCTACATCGCCGATTCTTGCGCGCTCTACACCAGCTCGGAGGATCAAGCGTGGCCACGCCAAAGCAGATTAGAGAGCTGATGAAATTGGATGGTCTAACTAACGACGAAGTTAAAAGCCATTTACAGAAATATCGTCTGCATACCAGAAGATCGAGTCCTCCGGCGCACAACAGTGGCGTCCAACCACCACCACAATATGTCGTAGTGGGTGGACTATGGGTGCAGCCGTCGGACTACGCGGCGGCACCGGCAACCACTGTTGCTGACGAGGTTAATAGAATGTGCGTGGTACCAGCTCCGGTATCGGAGGCATCAGGTTGTGGCGTTGAAAGGCCACAGCCAAAGCGATTAGTTCAGTCGAACTCCGAAGGAAAAACAGTCAGCCAAAGTGGAGGAGACGGCGTGGTCCATTCTAATTCTCCGGCGACGTCGTCGTCCACCCACACTTCTACAGCTTCCCCTCATCTTTGA 1116 50.81 MGVDYSEKIQGMAGEMGFKQYVEALKEERRKITVFQRELPLCLELITQAIESCTRQLSGTTTECFNGGQSECSEQTSSEGPVLEEFIPVKRALSSEFSDEEKKSLKMRKESKNSDKKKAGQSDWLKSAQLWNQAPDPDVKEDAPNKTAVVEVKRNGGAFRPFHREKLSGKTNQLDGKAPTVNATSTAETSSHSSLRPEEKEEQGKRKIRRCWSPELHRRFLRALHQLGGSSVATPKQIRELMKLDGLTNDEVKSHLQKYRLHTRRSSPPAHNSGVQPPPQYVVVGGLWVQPSDYAAAPATTVADEVNRMCVVPAPVSEASGCGVERPQPKRLVQSNSEGKTVSQSGGDGVVHSNSPATSSSTHTSTASPHL 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5393225 5394785 + BLOR00489 Blo01g00489 54929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00489 371 MobiDBLite consensus disorder prediction 330 371 - -
Blo01g00489 371 Pfam Myb-like DNA-binding domain 209 260 IPR001005 -
Blo01g00489 371 MobiDBLite consensus disorder prediction 98 206 - -
Blo01g00489 371 MobiDBLite consensus disorder prediction 157 171 - -
Blo01g00489 371 MobiDBLite consensus disorder prediction 173 192 - -
Blo01g00489 371 Gene3D - 206 264 - -
Blo01g00489 371 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 18 366 IPR044787 GO:0003700|GO:0006355
Blo01g00489 371 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 207 262 IPR006447 GO:0003677
Blo01g00489 371 MobiDBLite consensus disorder prediction 318 371 - -
Blo01g00489 371 PANTHER TRANSCRIPTION FACTOR HHO2 18 366 - -
Blo01g00489 371 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 204 264 IPR017930 -
Blo01g00489 371 SUPERFAMILY Homeodomain-like 205 265 IPR009057 -
Blo01g00489 371 MobiDBLite consensus disorder prediction 98 122 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo01g00489 Blo11g00832 CCT
Blo01g00489 Blo16g01054 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00489 Blo-Chr1:5393225 Blo01g00709 Blo-Chr1:8643988 1.25E-61 dispersed
Blo01g00489 Blo-Chr1:5393225 Blo11g00832 Blo-Chr11:14222147 3.13E-107 wgd
Blo01g00489 Blo-Chr1:5393225 Blo16g01054 Blo-Chr16:39063120 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11849 PF00249 Myb_DNA-binding 3.30E-07 CL0123 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00489 - - vvi:100257723 357.066