Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00495 ATGGAGAGGTTGGCGCAGGAGGTGGTAACGGCTTCACCGTCGGATAGAACTACGACGATGTTTGGATTCGTTGCCTGGGAGGAGGTGTTTGTGTCGAGCGATAAAGGGAGAAGAGAGGTCCATTACTATCTGAAGCGCGAAGACGGGAGCTCAGATCTGGCGGTGATAGGAAAGGAACGGAGCTTGAGGCATATGTCTTATGCGTATGCGATAGGTAATCGAGCTCTTGTTTTGGCCCGGCCGTTTTCGTCGCTCCCAAAACTTAAGTCACGAAGAGACGTGATTGATTGGCTTGACTCCATTGTTTCAGGTACATACACCTCTCTCTCTTTCTCTTTATCCATTTTCTCCCTTATTTCTGTATCTTCTCAGTCAATGAACAAAAATCGAATTTATTTACAGCAGTCGCACCAATCTGATCGTTTCTTAGATGTGAAAGATGTCTATCAGTGGGATACCAAATCATCCAAGGATATTCAATTACGGAAGTCAGGGCAGCATACTAGAGAATTTTCATGGTTGGGCTCTGCTTGGACATGCAGAAAAAGGCGCAGACATTTTCAGTCATTTTGTAGGAATGGCATTGAAATCTCTGTTTGTGATTTTGTTTATGTTCTTGCTGAGGAAGACCAACGACTTGTTGCTTACTTGGAAGATATGTATGAGGATTCTAGAGGCAGCAAAATGGTTGTGATACGATGGTTTCACAAAATTGATGAGGTTGATATTGCTTTGCCTCGCCATTTTAATGACAGGGAGATTTTCTTTTCTCTTTGTCTTCAAGATCTCAGTATTGAGTGCATAGATGGATTGGCTGTGGTCCTCAGTCCCCAGCATTTTGAGAAGTTTTTGAGTGAAGCAATAAGCACTAAGTTGGAACCATATCTGTGCAGAAAGCAATTTGACAATGATGATGTTAAGCCTTTTGATATTACCCAGGTCAGAGGCTATTGGAAGCAGGAAATTCTTAGATATATGTATACTCTCCCCTCTCTTAAGGCTGATGGAGCTTCAGAGCAGTCTGATGGTGCTGATGATGAAGAAACTGAAAATGCTTTATGTATCAGAGCTAAAAAAAGGCGGCTGTTAAGTGACGATGACATGAACCTTGACAGCAAAAAGTGGCAGGATAGAGCTTCTCATCAACTTCAATGTTTGAGTAGTAGTGTGACGGATGATAAAGGTAGAACTGGAGCATCTAATCAGAATGGAGGTGTTGCTGCCAGAATTTTGGCTAGGAAAGAGACACAACGAAAGTCTCCTCTTTATTTAGCGCTGGGTTCTCAAGTTGAGGTCCTTTCGCAAGACAGTGGGATTAGAGGCTGTTGGTTTAGAGCGAAAATAATCAAGAAGCACAAGGATAAAATTAAGATTCAATATCATGATCTTCAGGATGCAGATGATGAATCTAACAAACTCATGGAATGGATTTCTGCAACCAGAATTGCTGCCCCGGATCACTTGGGTCTACGGGTTTGTTGGAGACCTACTATTCGCCCACTTCTACAGTCTAACAAATGCATTGTAGCCTTAAAGCTTGGTATTGGGTCAGTAGTTGATGCATGGTGGCACGGCGGATGGTGGGAAGGCATAGTGGTCCAGAGAGAATCCGAAGACAAGCTTCAAGTGCATTTCCCAGGAGAAAAGAAAGAGTCAACTTTTGGGCTAAGTGATTTGAGGCTTTCTCGAGAATGGCTGGGAAGTGGGTGGATGGATATTAAGGAAAGGCCAGATATTGCTGCCACACTTTCAAGCTTGGAAAAACAAAAAGTTGAAGAAGATGCTACTGATGGTAAATTACCTGAAGCAGTCATTTGTGACACTAGCCAATCTAGAAAAGATGAATCTACATATAAAAATTCTTGCCGGGATGCTGGATATAACAATAAAAAAGGGTTTTGTATGGTTCCTGATCTTTCTAAGGACAACTCGCTCAGTAAATTGAAGTGGAGTTCATCAAGAAAACGAAGTCATATTAATGTGATCACTTACCAGAAGCCACATTTTGACGTCAAACGCAGTAGAAGCATTTTCCCATCCCGAACGAAGGAAAGCTTTTTTATTTCCACACCCTTGAAAGTTGATCATGAAAATTGCAAGCAAATTGAAGAGTTCCCGTTTTGTTCTTCCGTCGTCGCTCCTCTAACAAGCTTGGTGATGTCCAGTGCTCTCTCCGATTACTTGCCCAAATTGTTTTCTTTAGTGGGTATTGGGTCCTACTTTTGTCGTCATACTTACACTTTGGAATGGCATCCCATGGGTATTTGCACTCTAATTCTGACTATTTGGAGAGTAATTGTTGGCAACCCGATGTTAGTCTTATTGATTTTTGTGAAGCAAGACAAGCCAAAGAAACCCCCCGTAGCAGCTGGAAGCAGAAACTCGAAGGGGTTACCTTTTCAAAGCCTTGCATCTGTTGAATCCTTATCTGTTCCCCATGAAGTGGTTCTCTCAGCTGATATTCAGTGCGCAGAATGTGAAAGAAGAATAGCTGATGTCATGTCTAAAATGATGGGTAATAAATTCTTCTTCTCTCCTTTAACCCTTTTGAAAATGCTCCAAAAACTCAACGATTCCATTAGAGACCAGTTTCAGTGGTTGCAGGAAGTCGAGACAGAATCAGTGGTGATCAATGTGTTTGAGAAGACAATAACGGTAACTGGCCGACATTCAAATCCTGCAAAACAACAACCTTCACTGCAACTCGCTTCCACATATCATGGCGGACTTCCGAAAATGGCTACCATCAAACGGATTCTTCGCTCTTCCTTCGGATGA 2778 42.33 MERLAQEVVTASPSDRTTTMFGFVAWEEVFVSSDKGRREVHYYLKREDGSSDLAVIGKERSLRHMSYAYAIGNRALVLARPFSSLPKLKSRRDVIDWLDSIVSGTYTSLSFSLSIFSLISVSSQSMNKNRIYLQQSHQSDRFLDVKDVYQWDTKSSKDIQLRKSGQHTREFSWLGSAWTCRKRRRHFQSFCRNGIEISVCDFVYVLAEEDQRLVAYLEDMYEDSRGSKMVVIRWFHKIDEVDIALPRHFNDREIFFSLCLQDLSIECIDGLAVVLSPQHFEKFLSEAISTKLEPYLCRKQFDNDDVKPFDITQVRGYWKQEILRYMYTLPSLKADGASEQSDGADDEETENALCIRAKKRRLLSDDDMNLDSKKWQDRASHQLQCLSSSVTDDKGRTGASNQNGGVAARILARKETQRKSPLYLALGSQVEVLSQDSGIRGCWFRAKIIKKHKDKIKIQYHDLQDADDESNKLMEWISATRIAAPDHLGLRVCWRPTIRPLLQSNKCIVALKLGIGSVVDAWWHGGWWEGIVVQRESEDKLQVHFPGEKKESTFGLSDLRLSREWLGSGWMDIKERPDIAATLSSLEKQKVEEDATDGKLPEAVICDTSQSRKDESTYKNSCRDAGYNNKKGFCMVPDLSKDNSLSKLKWSSSRKRSHINVITYQKPHFDVKRSRSIFPSRTKESFFISTPLKVDHENCKQIEEFPFCSSVVAPLTSLVMSSALSDYLPKLFSLVGIGSYFCRHTYTLEWHPMGICTLILTIWRVIVGNPMLVLLIFVKQDKPKKPPVAAGSRNSKGLPFQSLASVESLSVPHEVVLSADIQCAECERRIADVMSKMMGNKFFFSPLTLLKMLQKLNDSIRDQFQWLQEVETESVVINVFEKTITVTGRHSNPAKQQPSLQLASTYHGGLPKMATIKRILRSSFG 925
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5424527 5431408 - BLOR00495 Blo01g00495 54935

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00495 925 Gene3D - 166 311 IPR043151 -
Blo01g00495 925 SMART BAH_4 195 312 IPR001025 GO:0003682
Blo01g00495 925 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 15 721 - -
Blo01g00495 925 Pfam Agenet domain 427 499 IPR008395 -
Blo01g00495 925 Pfam BAH domain 196 304 IPR001025 GO:0003682
Blo01g00495 925 ProSiteProfiles BAH domain profile. 195 312 IPR001025 GO:0003682
Blo01g00495 925 PANTHER AGENET AND BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 15 721 - -
Blo01g00495 925 SMART agenet_At_2 511 567 IPR014002 -
Blo01g00495 925 SMART agenet_At_2 422 488 IPR014002 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00495 - - - qlo:115990615 728.398
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g00495 Blo16g01057 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00495 Blo-Chr1:5424527 Blo02g01032 Blo-Chr2:40084257 1.97E-08 dispersed
Blo01g00944 Blo-Chr1:23361347 Blo01g00495 Blo-Chr1:5424527 1.63E-09 transposed
Blo03g00519 Blo-Chr3:19420149 Blo01g00495 Blo-Chr1:5424527 5.28E-96 transposed
Blo16g01057 Blo-Chr16:39107614 Blo01g00495 Blo-Chr1:5424527 0 transposed
Blo01g00495 Blo-Chr1:5424527 Blo16g01056 Blo-Chr16:39096836 3.09E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g294 Blo01g00495 Blo16g01057 Bda01g02081 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe02g02274 . . . . . . . . Car15g00849 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004134 1 5 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 2 44