Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00507 ATGTACATTTCACACCTCCCCTTGCGCTTCGCATGCTCGTATCAATCACGATTTCTGGCCTTTCACAACTCTGAATTGCTTGAAAACATCATTCCATCTTCAACAGAAGGAACAATGGATCTGTTCTTCAAAGGAATTCCTTTGAGAATTCAAAATGAGAGAAACTTTCGAATCAAAACCACCATTACTCTCTCTTTCTTACTCTCCTTTCTTCTGTTTTCTCTAGGGATCTTCGTCCATGGACGCGTCAAAACTTTCTTAAACACAGATGATTACTACAACTACACCTTTTCTTCTTCTTCTTCGTCTCTCTTCTCCAAACCTCCTCCATTGTCGTATCTCACCTGCAACTTTTCATCCGCTTCATTTTCAGTCCCAAAAGAGGAAGGAGGAGGAGTATGGCACTCCATGAGCGATGAAGAGCTCATGTGGCGAGCTTCTATGGTGCCTCGTTTTAAAGAAAACCCAAATAATCAGACGGCGAAAGTGGCCTTCATGTTTTTAACTAGAGGAAGACTGCCATTAACTCCACTCTGGGAAATGTTCTTTGAGGGTTATAAAGGTTTGTACTCAATTTACGTGCATACCTCGCCGGAGTACATGAAGGATCCTCCGCCGACCTCTGTTTTCTACAACCGTCGAATACCCAGCAAGTCCTTTTATATTCTAGTATTTTATTTAGAGAGTCCGTGTGAAAATAAACAAACTCTTTTATTTAAAAGTTATAATAATATTTGTATGAATTTTCGGCATTTTTATTTCAGATTTATATTATCACTATATCTTGATGTAGTAGAATGGGGAAGATCATCATTAGTCGACGCAGAGAGGCGCCTACTAGCGAACGCCCTCCTTGATTTCTCCAACAAACGATTTGTCTTACTATCCGAAACATGCATTCCTCTCTTTAACTTCTCTATGCTCTACTCCTACCTCGTCAACTGCAACCAAACCTTTGTCAGTTCCTTCGATGATCCCCGACCCATCGGCCGGGGTCGCTACAACAAACGAATGTGGCCAACTATATCACTTAAGGACTGGCGAAAAGGCAGCCAATGGTTGGAAGTGGACAGGAACATCGCCATTGAGATTGTTTCCGATACTTTGTATTACCCTATCTTTAGAGCTCTTTGTAACCCGCCTTGTTACATGGATGAGCACTATGTGGCAACATTGGTGACAAAAATCTCTACGGAGACAAACTCGAACCGCTCCATCACTTGGGTGGATTGGCCTCTCAAAGGCGGTCCGCACCCGACTACGTTTGTGAGGAAAGACGTATCCGAAGGGTTCTTGAATGGGGTGAGGAATGGGTTCAATTGTAGTTATAATGGTGTTGTTACTAATATGTGCTTCCTTTTTGCTAGAAAATTTCACCCCAACACACTGGAACCTCTGTTGAAATTAGCTCCTAGGGTTCTTGGGTTTGGTACTTCTTAA 1440 42.29 MYISHLPLRFACSYQSRFLAFHNSELLENIIPSSTEGTMDLFFKGIPLRIQNERNFRIKTTITLSFLLSFLLFSLGIFVHGRVKTFLNTDDYYNYTFSSSSSSLFSKPPPLSYLTCNFSSASFSVPKEEGGGVWHSMSDEELMWRASMVPRFKENPNNQTAKVAFMFLTRGRLPLTPLWEMFFEGYKGLYSIYVHTSPEYMKDPPPTSVFYNRRIPSKSFYILVFYLESPCENKQTLLFKSYNNICMNFRHFYFRFILSLYLDVVEWGRSSLVDAERRLLANALLDFSNKRFVLLSETCIPLFNFSMLYSYLVNCNQTFVSSFDDPRPIGRGRYNKRMWPTISLKDWRKGSQWLEVDRNIAIEIVSDTLYYPIFRALCNPPCYMDEHYVATLVTKISTETNSNRSITWVDWPLKGGPHPTTFVRKDVSEGFLNGVRNGFNCSYNGVVTNMCFLFARKFHPNTLEPLLKLAPRVLGFGTS 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5610374 5612473 + BLOR00507 Blo01g00507 54947

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00507 479 Pfam Core-2/I-Branching enzyme 163 219 IPR003406 GO:0016020|GO:0016757
Blo01g00507 479 Pfam Core-2/I-Branching enzyme 263 435 IPR003406 GO:0016020|GO:0016757
Blo01g00507 479 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 52 475 IPR044174 GO:0016757
Blo01g00507 479 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN 52 475 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00507 - - - jre:109012531 480.715
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00507 Blo-Chr1:5610374 Blo01g00733 Blo-Chr1:9527240 4.47E-123 dispersed
Blo01g00507 Blo-Chr1:5610374 Blo12g01006 Blo-Chr12:28042294 6.17E-107 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g338 Blo01g00507 . Bda01g02064 Bda11g00105 Bpe13g01106 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0819 Cone6ag0432 . . . . . . . . Bda11g00105 . Bpe02g02071 Bma01g00390 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002679 1 2 1 1 1 2 2 2 2 2 1 2 0 2 2 2 2 6 2 2 2 3 2 2 2 1 2 2 2 3 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00507 Blo_Chr01 FPKM 8.902357 6.886065 8.544001 6.837951 16.231602 7.737555 17.86356 5.770361 7.062861 5.127276