Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00513 ATGGGTGAAGGAGAGGAGGCTGATTCGGTTCAAGAAAAGACTCAGCCAGATGGTGCGACATCAAGTGACGCTGCTTCGTCAGACGTCCCAGCTAAAAAGCTCGCGAGGCAGCTGGATTTTACGGGCTTTGGGAGGATGTCAGGGAGTGTGGTCTTGCCTGAGCATCCTCAGCCTCAATCTCAGATACAGTCGCAGTCGCGTTCTCAGTTGCCAACTGTGGCGGCACCTGCGCCCCAGAGCCAGCCTCAATTACAGCCGCCTCAGTCACAGCCACAGATGGTGGTCATACCCGTAGTACCATCTCCGAGGGTTTCAAAACCAGATTCCCCAAAGTCAAGACCAAGATCCAACGTTGAAGCAAAAGATTGTACTCCAAAGAAGCAAAAACAGTGTAATTGTAAACACTCACGGTGCTTAAAGTTGTATTGTGAGTGTTTTGCTTCTGGAATATATTGCGATGGTTGTAACTGCATAAACTGCTATAATAATGTTGAAAATGAAGCTGCTAGGCGTGAAGCAGTTGAATCCACTTTGGAGCGTAATCCAAATGCGTTTCGACCAAAAATTGCTAGCAGTCCACAGGGGATACGTGATAATAGGGAAGAAGCTGGAGAGGTTCTAATGTTGGGAAAGCACAACAAAGGATGCCATTGCAAGAAATCAGGGTGCCTAAAAAAGTACTGTGAGTGTTTCCAGGCCAACATTCTCTGCTCTGACAATTGTAAATGCATGGATTGCAAAAACTTTGATGGAAGTGAAGAGAGACAAGCTCTATTCCATGGGGACCATGGAAATAACATTGCATACATACAGCAGGCAGCTAATGCTGCTATAACCGGAGCTATTGGATCCTCGGGATATGCATCCCCTCCGGTGTCAAAGAAAAGGAAAGGACAAGAGCTTTTCTTTGGGGCAACGCCCAAAGATTCGTCCATTCATAGGCTGGCACAATCTCAACAGGCAAATCAGATTAGAACTTCAACGGCCTCCTTGCCTTCAATCCCTGTTACTCGAGCTGGTTCCAATGCAGCATTGGCCCCCTCAAAGTTCACTTACAGATCATTATTAGCAGACATCATCCAACCACAGGATTTGATGGAGCTCTGCTCTGTATTAGTTGTTCTGTCAAGTGAAACTGCCAAGACAGTCGCAGATCAAAGAAATGCTACAGAAAGGGGGGCCGACAATCAAACAAAAGAAACTTGCCTTGCTTCCGCAACTCATGAGAGGCTGCAGAGTCAAAAGGAATCTGTGGAGAAAGCTGTAGACAATGATTGTTCTAGTGCAAATCAGGCTGATAAAATCAGCCCTGGTAATTCCAGTTCAGACGGAGCAGATGTACCAAAAGGAAGGCCCATGTCTCCGGGAACTTTAGCTTTGATGTGCAATGAAGAAGACGCAATGTTTATAGCAGCTGCGTCACCCAATGGGATAATGGGTCATGGTTGCACTGCATCATCGCAATTGTCATGTGGACAAGACATGTCGGAAGTCTACGCAGAGCAAGAACGGATAATCTTGACAACATTTCGTGATTGTCTGAAGAAGCTCATAACTTTTGGCGAGATAAAAGAAGCAAAGTGCTCATATCTAGCTCGAAACAATGTAGGAAATCACAAAGACCAACTCTGTAATGGTACAACTAAACCCCAAACCGAAGGCGGAAGTCAAACTCAACAGGCACCCATCATTAACGGAGTTGGAGTAATTCCGCCCAAGACATCACCGATGGTCAACTCGACGACGGTGATCCCTCCCAATGCTCATCATCACAAAATTGCATCTCTTCCAGGGCAGGATATTCGCTTCGAAGCAGGAAGAAGTGGAAGAGCTTCAATGGCGTCCTCGAAGCTGGTCATTAGGTTATCTTCCCGATTACAGGCCATTGCTCCAAAGCTCAGTAGAAAATCTCTTTTGCCGGAGCTCTGTTCTCCTAAATTTAACCGCCGAACTTCATTTTTAGATTCCTCCACTCGCATTGCTCGCAATTCGAGATTACCCGTGGAGTTGGGTAGTCAGGAGTCGATGATGCCGTTGCACAGCGCCATTGCTTCTGCCCGATTGATTTCAAGCTTAACAATTGATTCCCAGAGCTGGGGTTTAGTTCCTCAAGGTCTGTATTATCACTCTTCATTGCCAATTGCTATTTGA 2151 46.26 MGEGEEADSVQEKTQPDGATSSDAASSDVPAKKLARQLDFTGFGRMSGSVVLPEHPQPQSQIQSQSRSQLPTVAAPAPQSQPQLQPPQSQPQMVVIPVVPSPRVSKPDSPKSRPRSNVEAKDCTPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCINCYNNVENEAARREAVESTLERNPNAFRPKIASSPQGIRDNREEAGEVLMLGKHNKGCHCKKSGCLKKYCECFQANILCSDNCKCMDCKNFDGSEERQALFHGDHGNNIAYIQQAANAAITGAIGSSGYASPPVSKKRKGQELFFGATPKDSSIHRLAQSQQANQIRTSTASLPSIPVTRAGSNAALAPSKFTYRSLLADIIQPQDLMELCSVLVVLSSETAKTVADQRNATERGADNQTKETCLASATHERLQSQKESVEKAVDNDCSSANQADKISPGNSSSDGADVPKGRPMSPGTLALMCNEEDAMFIAAASPNGIMGHGCTASSQLSCGQDMSEVYAEQERIILTTFRDCLKKLITFGEIKEAKCSYLARNNVGNHKDQLCNGTTKPQTEGGSQTQQAPIINGVGVIPPKTSPMVNSTTVIPPNAHHHKIASLPGQDIRFEAGRSGRASMASSKLVIRLSSRLQAIAPKLSRKSLLPELCSPKFNRRTSFLDSSTRIARNSRLPVELGSQESMMPLHSAIASARLISSLTIDSQSWGLVPQGLYYHSSLPIAI 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5647790 5654553 - BLOR00513 Blo01g00513 54953

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00513 716 PANTHER TESMIN/TSO1-RELATED 24 561 IPR028307 -
Blo01g00513 716 SMART CXC_2 126 166 IPR033467 -
Blo01g00513 716 SMART CXC_2 211 252 IPR033467 -
Blo01g00513 716 MobiDBLite consensus disorder prediction 407 452 - -
Blo01g00513 716 MobiDBLite consensus disorder prediction 13 27 - -
Blo01g00513 716 MobiDBLite consensus disorder prediction 423 443 - -
Blo01g00513 716 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 214 248 IPR005172 -
Blo01g00513 716 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 128 163 IPR005172 -
Blo01g00513 716 MobiDBLite consensus disorder prediction 46 121 - -
Blo01g00513 716 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 24 561 - -
Blo01g00513 716 MobiDBLite consensus disorder prediction 1 33 - -
Blo01g00513 716 MobiDBLite consensus disorder prediction 53 79 - -
Blo01g00513 716 ProSiteProfiles CRC domain profile. 127 251 IPR005172 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00513 - - - zju:107431760 747.658
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g00513 Blo16g01025 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00513 Blo-Chr1:5647790 Blo02g00527 Blo-Chr2:8671327 1.68E-30 dispersed
Blo15g00696 Blo-Chr15:21895112 Blo01g00513 Blo-Chr1:5647790 2.48E-06 transposed
Blo01g00513 Blo-Chr1:5647790 Blo16g01025 Blo-Chr16:38605507 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g318 Blo01g00513 Blo16g01025 Bda01g02058 Bda11g01097 . Bpe02g02248 . . . . Cma05g01345 Cma12g01257 Car05g01259 Car12g01226 . . Cpe18g00421 . . . . . . . Cla11g00214 . Cec11g0247 Cco11g0258 Clacu11g0377 Cmu11g0227 Cre11g0724 Cone2ag0303 Cone16ag0733 Cone4ag0740 . Lsi06g00857 Csa02g00117 Chy05g01376 . . . . . . Bpe13g01292 Bma01g00192 . Sed08g0784 Cmo05g01354 Cmo12g01288 Cma10g00634 . Car10g00582 Car11g00499 Cpe11g01118 Cpe07g01018 Bhi06g02018 Tan08g0159 Cmetu05g1534 . . . . Cla06g00866 . Cec06g0949 Cco06g0974 Clacu06g0939 Cmu06g0906 Cre06g1689 Lsi11g00253 . Chy02g01850 Cme05g01983
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo01g00513 BCT 106 567 CPP Transcription Factor Family AT2G20110 57.0 1.0e-135 480.7
Blo16g01025 BCT 105 522 CPP Transcription Factor Family AT2G20110 61.2 3.7e-133 472.2
Blo01g00513 BCT 23 566 CPP Transcription Factor Family AT4G29000 55.7 7.1e-154 541.2
Blo16g01025 BCT 106 528 CPP Transcription Factor Family AT4G29000 62.4 7.1e-146 514.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002094 2 3 2 1 2 2 4 2 2 2 0 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 3 2 1 65
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11853 PF03638 TCR 3.00E-12 No_clan Blo TF