Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00529 ATGTCGTGGCAAACATATGTCGATGAACATCTGATGTGCGATATCGATGGAAATCAGCTCACTGCAGCTGCAATCATCGGGCATGATGGAAGCGTTTGGGCCCAAAGCTCCACCTTCCCTCAGTTCAAGACTGAAGAAATAACTGGGATTATGGCTGACTTTGCTGAACCCGGAACACTTGCTCCAACTGGCTTGTACCTTGGAGGTGCAAAATATATGGTGATCCAAGGCGAGCCAGGAGCTGTTATTCGTGGGAAGAAGAATTCAGACAGCAAGGAGCTTGATTGTGATTTCTCACTAGAAGACCTCGAGACTATGAATGTCATCGGAAAAGGAAGTGGTGGTGTTGTACAACTTGTTCGTCATAAATGGATAGGAAAATTCTTTGCTTTAAAGGTTATCCAGATGAACATACAAGAAGATATACGCAAACAGATAGTGCAGGAGTTAAAAATAAATCAAACAGCTCAGTGTCCACAAGTGGTGGTATGCTACCACTCATTCTACCACAATGGAGCTATTTCTCTTGTCCTAGAATACATGGATCGCGGATCTTTGGCAGATGTGATTCGACAAGTGAAAACAATTCTTGAACCATATCTGGCTGTGTTACTGGGTCTAGTGTACTTGCATCATGAACGACATGTCATACATAGGGACATAAAGCCATCCAATCTGCTTGTGAACCACAAAGGGGAGGTGAAAATTACTGATTTTGGTGTTAGTGCTATGCTAGCTAGCTCTATGGGCCAGAGGGATACTTTTGTAGGAACTTACAACTATATGGCGCCAGAGAGAATTAGTGGGAGTACCTATGACTGCAGTAGCGATATTTGGAGCTTAGGCATGGTAGTACTTGAGTGTGCTATAGGACGGTTTCCATACACGCAATCTGAAGATCAGAAGAGTTGGCCAAGCTTTTACGAGCTTTTAACAGCAATTGTGTCAAGCCCCCCTCCCTCTGCTCCACCAGATCAGTTCTCTCCAGAATTTTGTTCATTTATATCTGCTTGCATTCAAAAGGACCCGCAAAGGAGATCACCATCTTTGGACCTCTTGGGTCATCCTTTCATCAAAAAGTTTGAAAACAAAGACATTGATCTGGGAATACTTGTTGGCAGCTTGGAACCTCCTTTAAATTTCCCTAGGGTGACGATGGAAAGAGGTGGTGATCATGAATCAACATCGACCGTCGGATCCTTATTTGAGAGTTCGATCAACTCCGTTGAATCTTCCTCGTCGGAGCTGGTGGAGGATGCGTCGTCTTCCTCGACCTCAAACTCTTCGTTGTCTTTGTCAGCTTCGCCATTGCCAAGAAGGAATGGACCTTTATACGAATTATCCGAGCTCATGACCAATCTTCCTATAAAGAGAGGTCTGTCGAAATACTATGACGGGAAGTCAGAGTCTTTCGCAAGCATAGAGAGAGTTGAGAGTTTGGAGAATCTGGCTAAGAGGAAGAAGGCGAGTTTTAGCCATTACAATAAGAAGCTTAAAGGAAGCAGAAGCTATGGAGGAGGGTTGGAATCAGATGATCATAAATCTAGTGATCCAACTGTAATTACTGCTCAGAAAGCTTCAGAGGTTGTGACTTCAGTGGGCTTATATGATTTTGTGGATTTTGAATTGGTACTCGAGGTTGTAGCTCTAATTGGGTTGCCACATATGAAAACCCGATGGGGGCTGTTCAATAACATGTCTATTTTGTATATGAGAGTGAATGCTCTTAATGCTTTGGGTGGTCTTGGTATCAAAGCATCACGAAGCTATCCTCGTGCATCTTTTGTTGCATGA 1794 43.53 MSWQTYVDEHLMCDIDGNQLTAAAIIGHDGSVWAQSSTFPQFKTEEITGIMADFAEPGTLAPTGLYLGGAKYMVIQGEPGAVIRGKKNSDSKELDCDFSLEDLETMNVIGKGSGGVVQLVRHKWIGKFFALKVIQMNIQEDIRKQIVQELKINQTAQCPQVVVCYHSFYHNGAISLVLEYMDRGSLADVIRQVKTILEPYLAVLLGLVYLHHERHVIHRDIKPSNLLVNHKGEVKITDFGVSAMLASSMGQRDTFVGTYNYMAPERISGSTYDCSSDIWSLGMVVLECAIGRFPYTQSEDQKSWPSFYELLTAIVSSPPPSAPPDQFSPEFCSFISACIQKDPQRRSPSLDLLGHPFIKKFENKDIDLGILVGSLEPPLNFPRVTMERGGDHESTSTVGSLFESSINSVESSSSELVEDASSSSTSNSSLSLSASPLPRRNGPLYELSELMTNLPIKRGLSKYYDGKSESFASIERVESLENLAKRKKASFSHYNKKLKGSRSYGGGLESDDHKSSDPTVITAQKASEVVTSVGLYDFVDFELVLEVVALIGLPHMKTRWGLFNNMSILYMRVNALNALGGLGIKASRSYPRASFVA 597
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5842737 5853990 - BLOR00529 Blo01g00529 54969

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00529 597 Pfam Profilin 1 89 IPR005455 GO:0003779
Blo01g00529 597 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779
Blo01g00529 597 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779
Blo01g00529 597 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779
Blo01g00529 597 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Blo01g00529 597 SMART serkin_6 103 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo01g00529 597 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Blo01g00529 597 Gene3D Phosphorylase Kinase; domain 1 110 186 - -
Blo01g00529 597 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 6 86 382 - -
Blo01g00529 597 ProSiteProfiles Protein kinase domain profile. 103 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo01g00529 597 SUPERFAMILY Profilin (actin-binding protein) 2 90 IPR036140 -
Blo01g00529 597 PRINTS Profilin signature 40 60 IPR005455 GO:0003779
Blo01g00529 597 PRINTS Profilin signature 21 30 IPR005455 GO:0003779
Blo01g00529 597 PRINTS Profilin signature 64 78 IPR005455 GO:0003779
Blo01g00529 597 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Blo01g00529 597 Pfam Protein kinase domain 104 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo01g00529 597 MobiDBLite consensus disorder prediction 413 436 - -
Blo01g00529 597 Gene3D Dynein light chain 2a, cytoplasmic 1 109 - -
Blo01g00529 597 ProSitePatterns Protein kinases ATP-binding region signature. 109 132 IPR017441 GO:0005524
Blo01g00529 597 Gene3D Transferase(Phosphotransferase) domain 1 187 373 - -
Blo01g00529 597 CDD PKc_MAPKK_plant_like 101 363 - -
Blo01g00529 597 SMART prof_2 1 138 IPR005455 GO:0003779
Blo01g00529 597 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
Blo01g00529 597 SUPERFAMILY Protein kinase-like (PK-like) 101 427 IPR011009 -
Blo01g00529 597 CDD PROF 2 87 IPR005455 GO:0003779
Blo01g00529 597 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 86 382 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00529 K04368 MAP2K1, MEK1; mitogen-activated protein kinase kinase 1 [EC:2.7.12.2] - qsu:111995051 533.102
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00529 Blo-Chr1:5842737 Blo14g00559 Blo-Chr14:8397327 1.45E-135 dispersed
Blo01g00529 Blo-Chr1:5842737 Blo14g00525 Blo-Chr14:7457778 1.18E-20 wgd
Blo01g00529 Blo-Chr1:5842737 Blo16g01002 Blo-Chr16:38385098 1.05E-54 wgd
Blo01g00529 Blo-Chr1:5842737 Blo05g00073 Blo-Chr5:732465 6.85E-22 wgd
Blo01g00529 Blo-Chr1:5842737 Blo08g00324 Blo-Chr8:4882509 1.72E-16 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g254 Blo01g00529 . Bda01g02038 . . Bpe02g02226 . . . . Cma05g01373 Cma12g01275 Car05g01287 Car12g01246 . . . . . . . . . . Cla11g00183 Cam11g0213 Cec11g0214 . . . . . . . . . Csa02g00082 Chy05g01408 . . . . . . . Bma01g00211 . Sed08g1406 Cmo05g01376 . . . . . Cpe11g01143 . Bhi06g01689 Tan08g0109 Cmetu04g3241 . . . . . . . . . . . Lsi11g00218 . . Cme05g02012
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo14g00559 CCT 35 361 MAP Kinase Kinase Gene Family AT4G26070 68.8 6.2e-131 464.2
Blo16g00976 CCT 304 586 MAP Kinase Kinase Gene Family AT4G26070 63.4 6.7e-101 364.4
Blo01g00529 . 94 379 MAP Kinase Kinase Gene Family AT4G26070 58.8 1.6e-97 353.2
Blo14g00559 CCT 35 335 MAP Kinase Kinase Gene Family AT4G29810 71.8 1.1e-127 453.4
Blo16g00976 CCT 286 586 MAP Kinase Kinase Gene Family AT4G29810 62.4 1.6e-107 386.3
Blo01g00529 . 89 353 MAP Kinase Kinase Gene Family AT4G29810 61.9 6.5e-96 347.8
Blo13g00264 . 50 522 MAP Kinase Kinase Gene Family AT5G40440 77.6 2.3e-222 768.5
Blo01g00529 . 87 383 MAP Kinase Kinase Gene Family AT5G56580 83.8 3.9e-144 508.1
Blo14g00559 CCT 29 350 MAP Kinase Kinase Gene Family AT5G56580 59.4 5.7e-111 397.9
Blo16g00976 CCT 280 587 MAP Kinase Kinase Gene Family AT5G56580 57.4 5.2e-96 348.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007196 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 2 1 2 1 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84085 PF00069 Pkinase 6.70E-60 CL0016 Blo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00529 Blo_Chr01 FPKM 0.0 0.0 0.0 0.0 0.0 0.11003 0.095958 0.0 0.0 0.0