Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00533 ATGAAGATCGAGTATTTGGAGGACCAGGCATCTGACGGGGACGATGAAGTTTTTGACACTCAAATTGCCAAGGCTGATGCTAAGAGAGCTTTAGTTGGAGCGGGGGCGAGGATCCTGTTTTATCCGACTCTTTTGTATAATGTGGTTCGGAATAAGATTGAATCTGAATTCAGATGGTGGGATGAAGTTGATCAGTTTCTTCTTTTAGGTGCTGTTCCCTTTCCTAAAGATGTTCCTCGGCTGAAGCAGCTCGGTGTTGGTGGTGTTATCACTCTGAACGAATCTTATGAAACTCTCGTTCCATCGGCCTTGTATCGTAGCCATGGCATTGACCATTTAACGATTCCAACAAGAGATTATTGTTTTGCTCCTAAATTTGCAGATATAAGCCGAGCAGTTGATTTTATTCATAAAAATGCATCTTATGGGAAAACTACATACGTTCATTGCAAAGCAGGAAGAGGGAGGAGCACGACTATCGTCCTCTGCTATTTGGTTAAGTATAAAGACATGACGCCTATCGGGGCCTTAGATTTTGTTCGAATGAGGAGGCCTCGTGTTTTGTTGGCACCCTCGCAATGGGAGGCAGTTAAAGAATATAGCAATCGCCTCCCCACAACAGGCGCATACTCTCCCTCGAGAGATGCAGTTCTCGTCACAAAAGCCGACCTCGAGGGGTATTATGCGAATGGCAATGATTTCTCTGGTAAAGAGTTGGCAATTATCCCTAAAGTGGCAAAAACTAAGCCAATGATCGCCAGGCTGTCTTGTCTTTTTGCGTCCTTGAAAGTTAATGGGGGCAGCTCAGTCACAAGACGGATGCCTGTGCCGGAAGCTCGAGCTTGCTGA 849 45.47 MKIEYLEDQASDGDDEVFDTQIAKADAKRALVGAGARILFYPTLLYNVVRNKIESEFRWWDEVDQFLLLGAVPFPKDVPRLKQLGVGGVITLNESYETLVPSALYRSHGIDHLTIPTRDYCFAPKFADISRAVDFIHKNASYGKTTYVHCKAGRGRSTTIVLCYLVKYKDMTPIGALDFVRMRRPRVLLAPSQWEAVKEYSNRLPTTGAYSPSRDAVLVTKADLEGYYANGNDFSGKELAIIPKVAKTKPMIARLSCLFASLKVNGGSSVTRRMPVPEARAC 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5871123 5872997 + BLOR00533 Blo01g00533 54973

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00533 282 CDD PTPMT1 59 203 IPR044596 GO:0004721
Blo01g00533 282 PANTHER OS01G0739200 PROTEIN 14 282 - -
Blo01g00533 282 PANTHER - 14 282 - -
Blo01g00533 282 Pfam Dual specificity phosphatase, catalytic domain 81 202 IPR000340 GO:0008138|GO:0016311
Blo01g00533 282 ProSitePatterns Tyrosine specific protein phosphatases active site. 148 158 IPR016130 GO:0016311|GO:0016791
Blo01g00533 282 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 52 202 IPR029021 -
Blo01g00533 282 ProSiteProfiles Dual specificity protein phosphatase domain profile. 59 206 IPR020422 GO:0006470|GO:0008138
Blo01g00533 282 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 127 195 IPR000387 GO:0016311|GO:0016791
Blo01g00533 282 SMART dsp_5 62 203 IPR020422 GO:0006470|GO:0008138
Blo01g00533 282 Gene3D Protein tyrosine phosphatase superfamily 59 207 IPR029021 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00533 - - - mnt:21390393 437.573
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00533 Blo-Chr1:5871123 Blo03g00441 Blo-Chr3:13693147 8.21E-98 dispersed
Blo01g00533 Blo-Chr1:5871123 Blo04g00349 Blo-Chr4:2735410 3.68E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g246 Blo01g00533 . Bda01g02034 . . Bpe02g02223 . . . . Cma05g01379 Cma12g01280 Car05g01293 Car12g01250 . . . . . . . . . . Cla11g00178 Cam11g0207 Cec11g0207 Cco11g0221 Clacu11g0342 Cmu11g0192 Cre11g0690 . . . . . Csa02g00073 Chy05g01416 . . . . . . . Bma01g00214 . Sed04g1684 Cmo05g01381 Cmo12g01314 . . . . Cpe11g01148 Cpe07g01040 Bhi06g01678 Tan08g0100 Cmetu05g1458 . Hepe08g2635 . . . . . . . . . Lsi11g00210 . . Cme05g02021
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo13g00325 . 39 602 Protein tyrosine phosphatase (PTP) family AT3G50110 60.8 4.3e-186 648.3
Blo04g01266 . 544 1110 Protein tyrosine phosphatase (PTP) family AT3G50110 59.8 4.6e-180 628.2
Blo06g00279 . 39 430 Protein tyrosine phosphatase (PTP) family AT3G50110 65.1 9.4e-141 497.7
Blo17g00378 . 76 467 Protein tyrosine phosphatase (PTP) family AT5G39400 66.8 2.8e-154 542.0
Blo13g00941 . 6 849 Protein tyrosine phosphatase (PTP) family AT3G10550 66.6 0.0e+00 1130.2
Blo13g00941 . 6 851 Protein tyrosine phosphatase (PTP) family AT5G04540 63.1 2.3e-312 1068.1
Blo12g01054 . 56 1219 Protein tyrosine phosphatase (PTP) family AT5G58160 53.0 2.9e-282 968.8
Blo17g00002 . 568 1707 Protein tyrosine phosphatase (PTP) family AT5G58160 52.3 4.2e-281 964.9
Blo16g00180 BCT 113 533 Protein tyrosine phosphatase (PTP) family AT5G58160 62.0 4.3e-137 486.5
Blo16g00179 BCT 710 1079 Protein tyrosine phosphatase (PTP) family AT5G58160 59.2 1.4e-122 438.3
Blo04g00779 BCT 13 187 Protein tyrosine phosphatase (PTP) family AT5G58160 54.9 1.4e-42 172.6
Blo19g00154 . 104 230 Protein tyrosine phosphatase (PTP) family AT5G58160 66.9 1.3e-40 166.0
Blo01g01756 . 89 400 Protein tyrosine phosphatase (PTP) family AT1G71860 66.1 1.1e-122 436.8
Blo06g01155 . 18 910 Protein tyrosine phosphatase (PTP) family AT5G23720 61.2 5.3e-302 1033.9
Blo04g01221 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 78.7 1.3e-71 266.2
Blo04g00349 BCT 68 349 Protein tyrosine phosphatase (PTP) family AT3G52180 68.8 3.7e-113 404.8
Blo13g00691 BCT 114 387 Protein tyrosine phosphatase (PTP) family AT3G52180 69.0 8.6e-110 393.7
Blo04g00191 . 33 289 Protein tyrosine phosphatase (PTP) family AT3G10940 73.9 4.1e-112 401.4
Blo18g00335 . 137 579 Protein tyrosine phosphatase (PTP) family AT3G01510 71.7 4.6e-198 687.6
Blo02g00060 . 13 274 Protein tyrosine phosphatase (PTP) family AT2G32960 51.9 5.9e-65 244.6
Blo13g00337 BCT 169 350 Protein tyrosine phosphatase (PTP) family AT2G32960 64.6 5.9e-65 244.6
Blo17g00522 . 13 160 Protein tyrosine phosphatase (PTP) family AT2G32960 52.2 5.3e-50 194.9
Blo04g01214 BCT 24 150 Protein tyrosine phosphatase (PTP) family AT2G32960 54.9 1.6e-38 156.8
Blo03g00441 . 55 384 Protein tyrosine phosphatase (PTP) family AT2G35680 55.6 1.8e-98 356.3
Blo01g00533 . 6 265 Protein tyrosine phosphatase (PTP) family AT2G35680 53.0 5.5e-79 291.6
Blo01g00533 . 27 201 Protein tyrosine phosphatase (PTP) family AT5G56610 53.1 4.9e-45 177.9
Blo13g00337 BCT 148 350 Protein tyrosine phosphatase (PTP) family AT4G03960 55.6 2.1e-62 235.7
Blo17g00522 . 9 164 Protein tyrosine phosphatase (PTP) family AT4G03960 58.3 1.4e-53 206.5
Blo04g01214 BCT 25 141 Protein tyrosine phosphatase (PTP) family AT4G03960 64.1 2.3e-40 162.5
Blo17g00522 . 3 193 Protein tyrosine phosphatase (PTP) family AT3G02800 70.7 7.1e-82 300.4
Blo13g00337 BCT 160 347 Protein tyrosine phosphatase (PTP) family AT3G02800 53.7 2.0e-52 202.6
Blo04g00099 BCT 1 187 Protein tyrosine phosphatase (PTP) family AT3G55270 63.5 2.9e-59 227.3
Blo13g00894 BCT 5 184 Protein tyrosine phosphatase (PTP) family AT3G55270 65.4 6.6e-59 226.1
Blo17g00378 . 76 467 Protein tyrosine phosphatase (PTP) family AT5G39400 66.8 2.8e-154 542.0
Blo13g00325 . 29 602 Protein tyrosine phosphatase (PTP) family AT3G19420 68.5 1.2e-228 789.6
Blo04g01266 . 533 1110 Protein tyrosine phosphatase (PTP) family AT3G19420 68.0 2.7e-225 778.5
Blo06g00279 . 31 430 Protein tyrosine phosphatase (PTP) family AT3G19420 62.5 6.5e-147 518.1
Blo13g00325 . 39 602 Protein tyrosine phosphatase (PTP) family AT3G50110 60.8 4.3e-186 648.3
Blo04g01266 . 544 1110 Protein tyrosine phosphatase (PTP) family AT3G50110 59.8 4.6e-180 628.2
Blo06g00279 . 39 430 Protein tyrosine phosphatase (PTP) family AT3G50110 65.1 9.4e-141 497.7
Blo12g01054 . 56 1219 Protein tyrosine phosphatase (PTP) family AT5G58160 53.0 2.9e-282 968.8
Blo17g00002 . 568 1707 Protein tyrosine phosphatase (PTP) family AT5G58160 52.3 4.2e-281 964.9
Blo16g00180 BCT 113 533 Protein tyrosine phosphatase (PTP) family AT5G58160 62.0 4.3e-137 486.5
Blo16g00179 BCT 710 1079 Protein tyrosine phosphatase (PTP) family AT5G58160 59.2 1.4e-122 438.3
Blo04g00779 BCT 13 187 Protein tyrosine phosphatase (PTP) family AT5G58160 54.9 1.4e-42 172.6
Blo19g00154 . 104 230 Protein tyrosine phosphatase (PTP) family AT5G58160 66.9 1.3e-40 166.0
Blo13g00941 . 6 849 Protein tyrosine phosphatase (PTP) family AT3G10550 66.6 0.0e+00 1130.2
Blo13g00941 . 6 851 Protein tyrosine phosphatase (PTP) family AT5G04540 63.1 2.3e-312 1068.1
Blo03g00118 . 19 317 Protein tyrosine phosphatase (PTP) family AT2G35320 61.0 8.7e-108 387.1
Blo07g01154 . 1 657 Protein tyrosine phosphatase (PTP) family AT3G09100 70.5 1.9e-285 978.4
Blo07g01154 . 1 657 Protein tyrosine phosphatase (PTP) family AT5G01290 65.5 2.0e-258 888.6
Blo07g01154 . 83 664 Protein tyrosine phosphatase (PTP) family AT5G28210 57.7 2.5e-186 649.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006019 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 4 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00533 Blo_Chr01 FPKM 15.211802 17.182999 16.526497 16.682459 15.944407 17.108124 18.874142 21.914042 18.784214 20.550861