Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00565 ATGACAGAGAAGGAAAACCTTTGCCTTTATGGACTTCCTAATGAGAACTGGGAAGTTAATTTGCCAGCTGAGGAAGTGCCTCCGGAGCTGCCCGAGCCTGCATTAGGTATTAACTTTGCTAGAGATGGGATGGAAGAGAAAGACTGGTTGTCCCTGGTTGCTGTTCACAGTGATGCATGGTTACTTTCAGTGGCTTTTTATTTTGGTTCCAGATTTGGTTTCGATAAAGCTGACAGGAAACGTTTGTTCACGATGATAAATGATCTACCCACAATATTTGAGGTAGTGACTGGAAGTGTGAAAAAACAAGGAAAGGAGAAATCATCAATTTCAAATCACAGCAGAAATAAATCTAAGTCGGGCTCAAAAGGGAGAGGTTCAAAGGGGGTGTCAAAAGAAGAGGAAGAAGAATTGGAAGAAGAAGCAGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAGCATGGGGAGACCTTATGTGGGGCATGTGGAGAGAACTACGCAGCGGATGAGTTCTGGATTTGTTGTGACATTTGCGAGAAGTGGTTTCACGGCAAGTGCGTAAAGATAACTCCAGCGAGGGCCGAGCACATCAAGCAATATAAGTGCCCTTCTTGCAGCAACAAGAGAGCTCGGCCCTGA 645 45.43 MTEKENLCLYGLPNENWEVNLPAEEVPPELPEPALGINFARDGMEEKDWLSLVAVHSDAWLLSVAFYFGSRFGFDKADRKRLFTMINDLPTIFEVVTGSVKKQGKEKSSISNHSRNKSKSGSKGRGSKGVSKEEEEELEEEAEEEEEEEEEEEEEHGETLCGACGENYAADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 214
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 6216102 6217565 + BLOR00565 Blo01g00565 55005
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00565 214 CDD PHD_AL_plant 160 210 IPR044104 -
Blo01g00565 214 ProSitePatterns Zinc finger PHD-type signature. 161 207 IPR019786 -
Blo01g00565 214 Pfam Alfin 3 98 IPR021998 GO:0006355|GO:0042393
Blo01g00565 214 Coils Coil 128 159 - -
Blo01g00565 214 MobiDBLite consensus disorder prediction 104 157 - -
Blo01g00565 214 SUPERFAMILY FYVE/PHD zinc finger 149 211 IPR011011 -
Blo01g00565 214 Pfam PHD-finger 161 210 IPR019787 -
Blo01g00565 214 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 209 IPR013083 -
Blo01g00565 214 MobiDBLite consensus disorder prediction 134 157 - -
Blo01g00565 214 SMART PHD_3 160 208 IPR001965 -
Blo01g00565 214 ProSiteProfiles Zinc finger PHD-type profile. 158 210 IPR019787 -
Blo01g00565 214 PANTHER CPG BINDING PROTEIN 3 214 IPR045104 GO:0006355|GO:0042393
Blo01g00565 214 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 3 214 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00565 Blo-Chr1:6216102 Blo17g00276 Blo-Chr17:2903439 4.53E-100 dispersed
Blo01g00565 Blo-Chr1:6216102 Blo14g00563 Blo-Chr14:8484159 1.09E-57 wgd
Blo01g00565 Blo-Chr1:6216102 Blo16g00972 Blo-Chr16:37967267 4.02E-103 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11861 PF12165 Alfin 3.70E-50 No_clan Blo TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00565 - - tcc:18588326 343.199