Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Blo01g00565 | ATGACAGAGAAGGAAAACCTTTGCCTTTATGGACTTCCTAATGAGAACTGGGAAGTTAATTTGCCAGCTGAGGAAGTGCCTCCGGAGCTGCCCGAGCCTGCATTAGGTATTAACTTTGCTAGAGATGGGATGGAAGAGAAAGACTGGTTGTCCCTGGTTGCTGTTCACAGTGATGCATGGTTACTTTCAGTGGCTTTTTATTTTGGTTCCAGATTTGGTTTCGATAAAGCTGACAGGAAACGTTTGTTCACGATGATAAATGATCTACCCACAATATTTGAGGTAGTGACTGGAAGTGTGAAAAAACAAGGAAAGGAGAAATCATCAATTTCAAATCACAGCAGAAATAAATCTAAGTCGGGCTCAAAAGGGAGAGGTTCAAAGGGGGTGTCAAAAGAAGAGGAAGAAGAATTGGAAGAAGAAGCAGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAGCATGGGGAGACCTTATGTGGGGCATGTGGAGAGAACTACGCAGCGGATGAGTTCTGGATTTGTTGTGACATTTGCGAGAAGTGGTTTCACGGCAAGTGCGTAAAGATAACTCCAGCGAGGGCCGAGCACATCAAGCAATATAAGTGCCCTTCTTGCAGCAACAAGAGAGCTCGGCCCTGA | 645 | 45.43 | MTEKENLCLYGLPNENWEVNLPAEEVPPELPEPALGINFARDGMEEKDWLSLVAVHSDAWLLSVAFYFGSRFGFDKADRKRLFTMINDLPTIFEVVTGSVKKQGKEKSSISNHSRNKSKSGSKGRGSKGVSKEEEEELEEEAEEEEEEEEEEEEEHGETLCGACGENYAADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP | 214 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 6216102 | 6217565 | + | BLOR00565 | Blo01g00565 | 55005 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Blo01g00565 | 214 | CDD | PHD_AL_plant | 160 | 210 | IPR044104 | - | |
Blo01g00565 | 214 | ProSitePatterns | Zinc finger PHD-type signature. | 161 | 207 | IPR019786 | - | |
Blo01g00565 | 214 | Pfam | Alfin | 3 | 98 | IPR021998 | GO:0006355|GO:0042393 | |
Blo01g00565 | 214 | Coils | Coil | 128 | 159 | - | - | |
Blo01g00565 | 214 | MobiDBLite | consensus disorder prediction | 104 | 157 | - | - | |
Blo01g00565 | 214 | SUPERFAMILY | FYVE/PHD zinc finger | 149 | 211 | IPR011011 | - | |
Blo01g00565 | 214 | Pfam | PHD-finger | 161 | 210 | IPR019787 | - | |
Blo01g00565 | 214 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 150 | 209 | IPR013083 | - | |
Blo01g00565 | 214 | MobiDBLite | consensus disorder prediction | 134 | 157 | - | - | |
Blo01g00565 | 214 | SMART | PHD_3 | 160 | 208 | IPR001965 | - | |
Blo01g00565 | 214 | ProSiteProfiles | Zinc finger PHD-type profile. | 158 | 210 | IPR019787 | - | |
Blo01g00565 | 214 | PANTHER | CPG BINDING PROTEIN | 3 | 214 | IPR045104 | GO:0006355|GO:0042393 | |
Blo01g00565 | 214 | PANTHER | PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 | 3 | 214 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Blo01g00565 | Blo-Chr1:6216102 | Blo17g00276 | Blo-Chr17:2903439 | 4.53E-100 | dispersed | |
Blo01g00565 | Blo-Chr1:6216102 | Blo14g00563 | Blo-Chr14:8484159 | 1.09E-57 | wgd | |
Blo01g00565 | Blo-Chr1:6216102 | Blo16g00972 | Blo-Chr16:37967267 | 4.02E-103 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11861 | PF12165 | Alfin | 3.70E-50 | No_clan | Blo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Blo01g00565 | - | - | tcc:18588326 | 343.199 |