Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00571 ATGGCTACCCTAGACTCCGACGTCCCTATGGTTCCTGTGGGCGAGTCATCCAGCAACGCCGCATCGTCCTCTTCTAAGAAACCTAAGCGATTTGAGATCAAAAAGTGGAACGCCGTCTCCCTATGGGCCTGGGATATTGTTGTTGATAACTGCGCGATTTGCAGGAACCATATTATGGATCTTTGCATTGAGTGCCAAGCCAACCAGGCAAGCGCCACTAGTGAGGAATGTACAGTGGCTTGGGGTATTTCTTTTTTCATTGAAGGTGTGTGCAATCATGCATTTCATTTCCACTGCATCAGCCGTTGGCTCAAGACCCGTCAAGTCTGCCCACTAGATAACAGCGAGTGGGAGTTTCAAAAGTATGGTCACTAA 375 48.53 MATLDSDVPMVPVGESSSNAASSSSKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGISFFIEGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 124
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6275679 6279019 + BLOR00571 Blo01g00571 55011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00571 124 ProSiteProfiles Zinc finger RING-type profile. 62 114 IPR001841 -
Blo01g00571 124 CDD mRING-H2-C3H2C2D_RBX1 49 117 - -
Blo01g00571 124 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RBX1 1 124 - -
Blo01g00571 124 PANTHER RING BOX 1 124 - -
Blo01g00571 124 Pfam RING-H2 zinc finger domain 49 114 IPR024766 GO:0008270
Blo01g00571 124 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 124 IPR013083 -
Blo01g00571 124 MobiDBLite consensus disorder prediction 12 26 - -
Blo01g00571 124 SUPERFAMILY RING/U-box 29 121 - -
Blo01g00571 124 MobiDBLite consensus disorder prediction 1 29 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo01g00571 Blo16g00959 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00571 Blo-Chr1:6275679 Blo11g00547 Blo-Chr11:5110367 2.57E-12 dispersed
Blo01g00571 Blo-Chr1:6275679 Blo16g00959 Blo-Chr16:37832618 4.79E-77 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00571 K03868 - zju:107423885 237.269