Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00578 ATGGCGGTGGCGGTAAAAAGCAGTCGGATGACAGTGGCTGGGGAGTCTAATAAGATGAAGCGAAAAAAAGAAGATGAAGAAAGTGATATATTCGCTTCTTGCACTTTCTCCAGTCTGGGTTTGCATTCTACTTTATGCGACCAGCTTCGAGATAGAATGGGGTTTGAAGCTCCGACTCTCGTTCAAGCTCAGTCAATTCCGGTTATTCTCTCTGGGCGTCATGTACTTGTTAATGCCCCCACTGGCACTGGAAAAACGGTTGCCTATCTCGCTCCAATTATCCATCTTTTGCAACAGTATGATCCTCGAATTCAAAGGTCTGACGGAACATTTGCGTTGGTTCTTGTACCAACACGGGAGCTCTGTACCCAAGTTTATGAAATTCTGCAGAAACTTTTGCACCGTTTTCATTGGATTGTTCCAGGATATATAATGGGCGGTGAAAACAGGTCAAAAGAAAAGGCCAGACTGCGCAAAGGCATATCCATCCTCATTGCAACACCTGGGCGCCTCTTGGATCACTTAAAGAATACATCATCATTTGTGTACATAAATTTGCATTGGATAATATTTGATGAAGCTGATAGGATTTTAGAATTGGGATTTGGCAAAGAAATAGAAGAAATACTTGATCATTTGGGTTCGAGAAGTGTTTGTGCTAACAAGGAGAATTCAGCTTCAAGTTTCAAATTTGAAAGGCAAAATTTACTACTATCAGCTACCTTGAATGACAAAGTAAATCATCTGGCTGAAATTAGTTTAGAAAATCCAGTTATGATAGGTCTTGAGGATGCAGATCATATTCCAGTACTTAAATATAATGGGTCCGTAGAATTTGGAATGAAAGATGAAGCACCAGATGTGGCAGAAAGTTTGAGCTGTTCAATTGGAGATTATAAAATACCAACTCAATTAGTTCAGAGATATGTGGAAGGGTTTTCTAACTCATGGTTGTGTTCGGGTTGGTGTTTCGCCGGATTTGTGGCTTTTCTATTTCCGTTTGTGTGTTATTTTGGTCGTTTTATTTCAATGGAGTCGTTTTATCCCCATCTGCCCAACTTAGACGAGAAGCTAAACCTCATCACAAAGCCTGGCAGATTTGAGGTCGCTGAGGATGGTGTCACAACTACATATAGGAAGGTATGGACCCGCAGAGTTCCTTGCGGCTCTCGCCTCGCGGTGCTTCTTTCTATTCTGAAATCCCTGTTTGAGAGAGACTCCTCCCAAAAGGTTGTGGTATTCTTTTCAACATGTGATGCAGTCGATTTCCATTATGCTCTATTGAGTAATTTCAAATTCTCGCCTTCTATGGAACCAGAAGCAGAACATACACAAACATTTCTTAGATGCAAGACTTTCCGATTACATGGAAATATGAAGCAAGAGGATCGACGGACTACATTTCAGACATTTAAATCGGAGAAGTTGGCTCTTCTGTTGTCCACAGATGTTGCTGCTAGAGGACTTGATTTTCCAAAAGTTAGATGTATTGTACAGTATGACACTCCAGGAGAGTCAACTGAGTATGTTCACAGGGTTGGAAGAACTGCTCGATTAGGTGAAAGAGGAGATTCATTATTATTTTTACAACAAGTTGAAATAGATTATTTGCAAGATTTGGAGAAACATGGTGTATTGCTGACGGAATATCCTCTTGCGAAAGTGTTGGATAGCCTTCCTTCATATGCTACTCAGAGAAAACAGGATTTGAAATTCCTCTCCTTGGATTTGCATCCCCGGCTACTCTCTTTGCACAGAGCACTAGAATCTTACGTGTCTGCTGAGCCAAGGGTGATGAAGTTGGCCCAGAAGGCATTTTGCTCTTGGGTTCGTGCTTACACAGCCCATCGAGGGGAGTTGAAAAGATTCTTTACAGTGAAGAAACTTCACCTGGGGCATGTTGCTAAAAGTTTTGCACTGAAAGAACAGCCATCTTTGGTGGGGAAATCATTCCAAAAGGAAGCCAAGAAAAGGAAGAGGGAACAGAGGATGCATGGAGTTTCAGCAAAAAGGAGGAAAGTTGGCACCAAAAGAGGGAGGTTTCGTTTGAACTCGCCGGCAAATGGTGATTTTCCTGAATCTGCACTTCTAGTTTTTGGAGAAAAGAAGAACATCAACTCAGAGTTGTGGCATGCCTGCGCGGGACCGCTGGTTTCTTTACCTCCGGTCGGGAGCCTTGTAGTTTACTTTCCCCAGGGCCATAGTGAGCAGGTTGCAGCATCGATGCATAAGGAGACCGATTTTGTGCCCAACTATCCTAACCTTCCTTCCAAGTTGATTTGTATGCTCCATAACATCACATTACATGCTGATGTCGAAACTGATGAAGTCTACGCACAAATGACCCTTCAGCCTGTAACCAAATATGACAAGGAAGCTTTACTGGCATCTGATATAGGCCTCAAGCAAAGCCGGCAACCCGCTGAGTTCTTTTGTAAAACTCTTACAGCTAGTGACACGAGCACTCATGGTGGATTTTCTGTACCTCGTCGAGCGGCTGAAAAGATCTTTCCAGCACTAGATTACTCGATGCAACCCCCTGCTCAGGAGCTTGTCGCTCGAGATCTACACGATACTTCATGGATATTCAGACATATTTACCGTGGCCAACCTAAAAGACATCTGTTGACTACTGGCTGGAGTGTTTTTGTCAGTACAAAACGTCTCTTTGCCGGAGATTCTGTTCTTTTCATAAGAGATGAAAAATCACAGCATCTCCTAGGCATACGGCGGGCTAATAGGCAGCAGCCAGCTCTCTCTTCGTCTGTGATTTCTAGCGATAGCATGCACATTGGAATTCTCGCTTCTGCGGCCCATGCTGCATCGAATAATAGTCCGTTCACTATATTTTATAATCCTAGGGCGAGTCCTTCTGAATTTGTAATTCCCTTGGCCAAATACAATAAAGCAATGTACACCCATGTTTCCCTCGGCATGCGATTTCGAATGATGTTTGAGACGGAGGAGTTAGGGGTGCGTAGATACATGGGTACGATAACTGGTATTAGCGACTTGGATTCTTTGCGATGGAAAAGCTCACAATGGCGTAATCTTCAGGTTGGATGGGACGAATCAGCAGCTGGTGAAAGGCCCAGCCGAGTCTCCATTTGGGAAGTCGAGCCGGTCATAACTCCGTTTTACATTTGCCCGCCTCCATTTTTTAGACCCAAATTACCCAAACAGCCGGGAATGCCAGATGATGAATCCGAAATCGAAATCGCTTTCAAACGAGCTGTGCCGTGGCTTGGAGATGATTTTACCATGAAGGACACCCAGAGCCCGATTTTTCCCGGTCTTAGTCTGGCTCAGTGGATGAGTATGCAGCAAAATAATCAGTTTCCATCAGCTCAAGCCGGATTTTTACCATCAATGGTCTCCCCAAACGCCCATTCCCTGCATAATGCTTTAACCACTGATGATCCATCGAAATTACTGAGTTTCCAAACTCCGGTACTATCTTCACCTACTCCTCCCTATAATAAATCTAATCAGCAAGGCCAAGTTAGCCAATTGCAGCAGCCATCCTCTGCATGGCCCCAACAGCCCCACCAACAGCATCAGCCTCAGCCTCTGTCACAGGCGCAGCCATTATTGCAGATTCCAACCAGCCAACAGCTACATCGGCAGCAGCCACAGCACCAACAAAGCAAGCAAATTCTACCTCAACAACAGCTTTGCCAACCATCTCCTTCAAATAATAATGGTTTTGTTGGTAATCAGACGCAAAATCAAAATTTGCAGCAGCTGGTGGTGTCCTCTCAGCTTCAGCAACAGCAGTTGCTGGCCGGCAATGGCCAAACCCAGCAAAATATGAATAGATCATTTCAGATGACATCCTTACCACAAGATTCCATTTTTCAGCAACAAATGGAACAGCAAACCAACCTCGTTCCTAGGAATCAGCAACAACCTGGCCTTTCACAAAGAGCACAACAGACTCAACCAGTTCAACAGTTGCCTCAACAAACGCCTTTAGACCACCAACTTCATTTACAGATGCTCCAGAAATTACAGCAGCAGCAACAGCAGTTGCTCTTTCCAGCAAACCCATTATTACAGTCTCAGCTAGTACAGCTTCAGCAGAGCCATCATCAAAACCACCCACAACAAAACACCAATGCCTTTTCGACTTCGGGCCTTCTGCAGTCTCAACATATTCCTACGAACCAGCCCCGGCCCAAGGGCGGCCAATTCAAGCCTCTCAATGCCATCAGAGCTCAGTCTATGACGGATGGTGATGCCCCATCTTGCTCAACTTCACCTTCCACCAATAATTTCCATGTTTCAACATCAAATATTTTGAACAGAAAGCAAGGGCCAGTCACTCTAGCAGAATGTTCAGTTGTTGAGCCTTCAAACAATCTACTTCCGGAACTTCAAAGCAAATATGATAGCCGAATCAAACATGAATTTCCATGTGAGAAAGGACCAGATCTAATCAAATACAAAAACCCAATCACTGAGCAGTTAGAAGCATCCTCTTCTGGAACATCATACTGCCTAGATGCTGGCCCAACACAGCAGCCTATTCCACTTCCTGTCAGTTTAGACAATGATGTCCATTCCCATCATCGGATGAACGTTCCTTTCACGAGTAACATCGATGGGTTGATGCCGGAATCTTTGTTGTCGAGAGAATATGACTCTCAAAACTTACTTTCTAACTACACTAGCCTTCCAAGAGATATCGAGACAGAGTTGTCTAGTGCGCCAATCAGCCCACAGCCATTTGGAGTGCCAAACATGCCTCTGAAGCCCGGCTGCTCAAATGACGTCCCGATAAATGATTCTGGAGCCATGGGCGGCGGGTTGTGGCCAAATCATAGTCAACGCTTGCGGACCTATGCAAAGGTTCAAAAGCGCGGTTCTGTAGGAAGATGTATTGATGTGACCCGTTACCGAGGATATGGAGATTTAAGGTGTGATCTTGCCCGCATGTTTGGGATTGAAGGGCAGCTAGAAGACCCTCAAAGAACCGATTGGAAGCTTGTTTACGTAGATCACGAAAATGACATACTCCTTGTCGGAGATGATCCGTGGGAAGAGTTTGTGAGCTGTGTTCAGAGCATAAAAATACTTTCGTCCGGTGAAGTACAGCAAATGAGTTTGGACGGAGATTTGGGTCAAATTCAAATTCCGAATCAAGCGTGTAGTGGGACAGACAGTGGACATGCGTGGAGAGACGACCATTCAGCAGCTTCCTTCAATAGATAG 5214 44.55 MAVAVKSSRMTVAGESNKMKRKKEDEESDIFASCTFSSLGLHSTLCDQLRDRMGFEAPTLVQAQSIPVILSGRHVLVNAPTGTGKTVAYLAPIIHLLQQYDPRIQRSDGTFALVLVPTRELCTQVYEILQKLLHRFHWIVPGYIMGGENRSKEKARLRKGISILIATPGRLLDHLKNTSSFVYINLHWIIFDEADRILELGFGKEIEEILDHLGSRSVCANKENSASSFKFERQNLLLSATLNDKVNHLAEISLENPVMIGLEDADHIPVLKYNGSVEFGMKDEAPDVAESLSCSIGDYKIPTQLVQRYVEGFSNSWLCSGWCFAGFVAFLFPFVCYFGRFISMESFYPHLPNLDEKLNLITKPGRFEVAEDGVTTTYRKVWTRRVPCGSRLAVLLSILKSLFERDSSQKVVVFFSTCDAVDFHYALLSNFKFSPSMEPEAEHTQTFLRCKTFRLHGNMKQEDRRTTFQTFKSEKLALLLSTDVAARGLDFPKVRCIVQYDTPGESTEYVHRVGRTARLGERGDSLLFLQQVEIDYLQDLEKHGVLLTEYPLAKVLDSLPSYATQRKQDLKFLSLDLHPRLLSLHRALESYVSAEPRVMKLAQKAFCSWVRAYTAHRGELKRFFTVKKLHLGHVAKSFALKEQPSLVGKSFQKEAKKRKREQRMHGVSAKRRKVGTKRGRFRLNSPANGDFPESALLVFGEKKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMHKETDFVPNYPNLPSKLICMLHNITLHADVETDEVYAQMTLQPVTKYDKEALLASDIGLKQSRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPALDYSMQPPAQELVARDLHDTSWIFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQHLLGIRRANRQQPALSSSVISSDSMHIGILASAAHAASNNSPFTIFYNPRASPSEFVIPLAKYNKAMYTHVSLGMRFRMMFETEELGVRRYMGTITGISDLDSLRWKSSQWRNLQVGWDESAAGERPSRVSIWEVEPVITPFYICPPPFFRPKLPKQPGMPDDESEIEIAFKRAVPWLGDDFTMKDTQSPIFPGLSLAQWMSMQQNNQFPSAQAGFLPSMVSPNAHSLHNALTTDDPSKLLSFQTPVLSSPTPPYNKSNQQGQVSQLQQPSSAWPQQPHQQHQPQPLSQAQPLLQIPTSQQLHRQQPQHQQSKQILPQQQLCQPSPSNNNGFVGNQTQNQNLQQLVVSSQLQQQQLLAGNGQTQQNMNRSFQMTSLPQDSIFQQQMEQQTNLVPRNQQQPGLSQRAQQTQPVQQLPQQTPLDHQLHLQMLQKLQQQQQQLLFPANPLLQSQLVQLQQSHHQNHPQQNTNAFSTSGLLQSQHIPTNQPRPKGGQFKPLNAIRAQSMTDGDAPSCSTSPSTNNFHVSTSNILNRKQGPVTLAECSVVEPSNNLLPELQSKYDSRIKHEFPCEKGPDLIKYKNPITEQLEASSSGTSYCLDAGPTQQPIPLPVSLDNDVHSHHRMNVPFTSNIDGLMPESLLSREYDSQNLLSNYTSLPRDIETELSSAPISPQPFGVPNMPLKPGCSNDVPINDSGAMGGGLWPNHSQRLRTYAKVQKRGSVGRCIDVTRYRGYGDLRCDLARMFGIEGQLEDPQRTDWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSGEVQQMSLDGDLGQIQIPNQACSGTDSGHAWRDDHSAASFNR 1737
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6319798 6337150 - BLOR00578 Blo01g00578 55018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00578 1737 ProSiteProfiles B3 DNA-binding domain profile. 811 913 IPR003340 GO:0003677
Blo01g00578 1737 CDD SF2_C_DEAD 395 529 - -
Blo01g00578 1737 Pfam Domain of unknown function (DUF4217) 585 645 IPR025313 -
Blo01g00578 1737 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 700 1727 IPR044835 GO:0003677|GO:0006355|GO:0009725
Blo01g00578 1737 SUPERFAMILY DNA-binding pseudobarrel domain 801 940 IPR015300 -
Blo01g00578 1737 Pfam DEAD/DEAH box helicase 60 248 IPR011545 GO:0003676|GO:0005524
Blo01g00578 1737 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 34 63 IPR014014 GO:0003724
Blo01g00578 1737 Pfam Helicase conserved C-terminal domain 397 520 IPR001650 -
Blo01g00578 1737 Gene3D - 389 671 IPR027417 -
Blo01g00578 1737 Gene3D - 809 912 IPR015300 -
Blo01g00578 1737 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 398 578 IPR001650 -
Blo01g00578 1737 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 30 260 IPR027417 -
Blo01g00578 1737 ProSiteProfiles PB1 domain profile. 1613 1706 IPR000270 GO:0005515
Blo01g00578 1737 Gene3D - 4 262 IPR027417 -
Blo01g00578 1737 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 190 198 IPR000629 -
Blo01g00578 1737 PANTHER AUXIN RESPONSE FACTOR 19 700 1727 - -
Blo01g00578 1737 CDD DEADc_DDX31 45 261 - -
Blo01g00578 1737 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 66 260 IPR014001 -
Blo01g00578 1737 Gene3D - 974 1044 - -
Blo01g00578 1737 Gene3D - 1608 1702 - -
Blo01g00578 1737 SMART helicmild6 442 520 IPR001650 -
Blo01g00578 1737 Pfam AUX/IAA family 1624 1699 IPR033389 -
Blo01g00578 1737 MobiDBLite consensus disorder prediction 1 24 - -
Blo01g00578 1737 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 72 549 IPR027417 -
Blo01g00578 1737 CDD B3_DNA 810 906 IPR003340 GO:0003677
Blo01g00578 1737 Pfam B3 DNA binding domain 811 912 IPR003340 GO:0003677
Blo01g00578 1737 SMART ultradead3 54 271 IPR014001 -
Blo01g00578 1737 SMART DUF4217_3 583 648 IPR025313 -
Blo01g00578 1737 Pfam Auxin response factor 937 1019 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Blo01g00578 1737 SUPERFAMILY CAD & PB1 domains 1626 1691 - -
Blo01g00578 1737 SMART B3_2 811 913 IPR003340 GO:0003677
Blo01g00578 1737 MobiDBLite consensus disorder prediction 1146 1240 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo01g00578 Blo16g00853 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00578 Blo-Chr1:6319798 Blo08g00438 Blo-Chr8:8805932 0 dispersed
Blo06g00863 Blo-Chr6:31895231 Blo01g00578 Blo-Chr1:6319798 3.55E-26 transposed
Blo16g00854 Blo-Chr16:35968974 Blo01g00578 Blo-Chr1:6319798 2.48E-170 transposed
Blo01g00578 Blo-Chr1:6319798 Blo16g00853 Blo-Chr16:35921520 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11863 PF00270 DEAD 2.30E-41 CL0023 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00578 - K14486 csv:101210917 1308.12