Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00588 ATGGCTTCCTCCAATGTTATTCCAAAACTATTGCTCTTCCTCCTCATCTGTTCAATCTCATCTTCAAGAGGACTGGCTCTGGCTCTCAGCCCCTCCTCCTCTACCACCAAAAGCAGCTCTTTACATCCTTCCATAACATCACTCTGTAATTCCACTCCCTACCCAGATCATTGCTTCAACTCTTTGAAGCTCTCCCTTTCACTAAATATCGGGCCGGATCTCATAGCTCATCTCCTCCAGTCCCTCCAAACTGCAATATCAGAAGCCGAGAAGCTCTCCAGTATGATCCGGAGTGGAGGAAATCCAAACATAGTAGAGAAGCTAAGAGGAACAATGTTGGACTGCCAAGAACTCCACCAGATCTCAGTTTCTTGTTTGCGAAGATCAGCATCTCGAATCCAATCTGCTGATAATGCCCAGAAAATAGAAGACGCAAGAGCCTACCTTAGTGCAGCTCTTACCAACAAGAACACTTGTTTGGAAGGTCTAGAGTCTGCATCTGGTCCTTTCAAACCAATCTTAACAAATCTCTTAGTTGATACTTACAAGTATGTGAGCAATTCTCTCTCGCTACTCCCAAAATCAGGAGCTCGTCCGAAAGGCCTTCATAATCGCCGTCTCATGAATGCAAAGTTCCCGACATGGATGTCAAAGAAAGATCGCCGAATCTTGCAGAGTGATGACGAATATGACCCAAGCCAAGTGCTAACTGTTGCTGCAGACGGAACTGGAAACTTCACCACCATTACAGATGCTGTCAATTTTGCTCCAAACAATAGTGACGACAGAATAATTATCTATATCACTCAAGGGGTTTATGAAGAAAACGTGGTGATACCAAACAGCAAGCCCAACATTGTTTTTCTTGGGGATGGAAGCGACGTCACCATCATTACTGGTAAAAGAAGCGTGGGAGATGGTTGGACCACTTTCAGATCTGGAACCTTGGCGGTCTCTGGAGACGGATTCTTGGCTAGAGACATAACGATCATGAACACAGCTGGACCAGAGAAACACCAAGCGGTTGCCCTTAGAGTGAATGCAGACTTGACTGCATTGTATCGGTGTTCAATAAATGGTTACCAGGACTCATTGTATGTCCACTCCTTTCGTCAATTCTATAGAGAGTGCAACATTTCAGGAACAATAGATTACATATTTGGTAATGCCGCAGTGGTTTTCCAGGCATGCAACATAATGTCCATAATGCCGATGCCCAACCAATTCACAGTTATCACGGCCCAGTCTCGAGATACCCCCGATGAGGTGACTGGAATTTCTATCCAGAACTGCTCAGTAATTGCTTCAGATGAGCTGAGTGCAAACCGTGGGAAGGTCAAAAGTTACCTTGGGAGGCCATGGCGGGTGTACTCTCAAACAGTATACATAGGGTCCTACATTGATGAGTTCATTGAGCCAGTGGGATGGACCAAGTGGTCTGGTGATGAAGGTTTAGAGACACTCTACTATGGAGAGTATGGAAACTACGGTCCTGGTTCAGGAACGGATAACAGAGTTATGTGGGGAGGGTACCACAAAATGGATTACTATGATGCTTATAATTTCACGGTGTCAGAGTTCATCACCGGTGATGAGTGGCTTGACTCCACTTCGTTTCCTTATGACCAGGGAATTTGA 1638 45.3 MASSNVIPKLLLFLLICSISSSRGLALALSPSSSTTKSSSLHPSITSLCNSTPYPDHCFNSLKLSLSLNIGPDLIAHLLQSLQTAISEAEKLSSMIRSGGNPNIVEKLRGTMLDCQELHQISVSCLRRSASRIQSADNAQKIEDARAYLSAALTNKNTCLEGLESASGPFKPILTNLLVDTYKYVSNSLSLLPKSGARPKGLHNRRLMNAKFPTWMSKKDRRILQSDDEYDPSQVLTVAADGTGNFTTITDAVNFAPNNSDDRIIIYITQGVYEENVVIPNSKPNIVFLGDGSDVTIITGKRSVGDGWTTFRSGTLAVSGDGFLARDITIMNTAGPEKHQAVALRVNADLTALYRCSINGYQDSLYVHSFRQFYRECNISGTIDYIFGNAAVVFQACNIMSIMPMPNQFTVITAQSRDTPDEVTGISIQNCSVIASDELSANRGKVKSYLGRPWRVYSQTVYIGSYIDEFIEPVGWTKWSGDEGLETLYYGEYGNYGPGSGTDNRVMWGGYHKMDYYDAYNFTVSEFITGDEWLDSTSFPYDQGI 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6461976 6463966 - BLOR00588 Blo01g00588 55028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00588 545 SMART PMEI_2 40 191 IPR006501 GO:0004857
Blo01g00588 545 PANTHER PECTINESTERASE 13 544 - -
Blo01g00588 545 Gene3D - 231 545 IPR012334 -
Blo01g00588 545 SUPERFAMILY Pectin lyase-like 232 544 IPR011050 -
Blo01g00588 545 CDD PMEI-like_3 47 191 - -
Blo01g00588 545 Pfam Pectinesterase 237 531 IPR000070 GO:0030599|GO:0042545
Blo01g00588 545 ProSitePatterns Pectinesterase signature 2. 379 388 IPR033131 -
Blo01g00588 545 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 44 192 IPR035513 -
Blo01g00588 545 TIGRFAM PME_inhib: pectinesterase inhibitor domain 27 191 IPR006501 GO:0004857
Blo01g00588 545 PANTHER PECTINESTERASE 13 544 - -
Blo01g00588 545 Pfam Plant invertase/pectin methylesterase inhibitor 44 190 IPR006501 GO:0004857
Blo01g00588 545 Gene3D Invertase/pectin methylesterase inhibitor family protein 42 194 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00588 Blo-Chr1:6461976 Blo06g00502 Blo-Chr6:26918789 1.60E-136 dispersed
Blo01g00588 Blo-Chr1:6461976 Blo16g00865 Blo-Chr16:36177127 1.38E-128 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00588 - - tcc:18588201 763.837