Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Blo01g00598 | ATGTCAGGTTGGGACGAAGGTGCAATCTACTATAGCGATCAGGCTCAGTCTCTCGGAGATGGTTCCAGCGGTGGTCGTATCGGAGATCCAGAATCTGCAGATGCCACAAACTACTCGGTGCTTCGTAAGTTCAAGGAGTTCATCCGAAGCTTTGAAACCAATAAAAATGTCTTCCCCTATAGAGAAAGCCTGCTCCATAACCCTAAATTCCTCTGCGTCGACATGGAAGATCTTAACGCCTTCGATGCTGACCTCCCAGATAAGCTACGGTCTTCTCCCTCCGATTACTTGCCCCTGTTCGAGACTGCAGCAGCAGAAGTTGTGATGAATTTAAGGACGAAGGTAGCAGGAGAGACCGGAGAAATGGTGGAACCAGTGCCTGGAGATGTTCAAATTCTTCTTATTTCAAAGGAGGATCCGGTGTCAATGCGTTCACTTGGGGCTCAATACATATCAAAACTTGTGAAAATTTCTGGAATCACCATTTCTGCGTCAAGGACAAAGGCGAAAGCAACATATGTAACCCTATTATGTAAGAACTGTAGAAGTATGCAAAGAGTTCCCTGCAGGCCAGGACTCGGGGGAGCGATTGTCCCTCGCTCTTGTAATCATGTTCCGCAGGCCGGAGAGGAGCCATGCCCATTGGATCCTTGGATAGTGGTTCCTGACAGGAGCACGTATGTTGATCAACAAACATTAAAATTGCAAGAAAATCCGGAGGATGTTCCAACTGGAGAGCTTCCCAGGAATATGCTTTTGTCAGTTGATCGCCATCTTGTTCAAACGATTGTTCCAGGCACAAGATTGACCATCATGGGGATATATAGTATCTTTCAAGCTGCAAATTCCTCAGCATCCCACAAAGGAGCAGTTGCAGTTAGGCAGCCTTACATCAGGGTTGTGGGAATGGAGGAAGCAAGTGAGGCCAAATCTAGAGGTCCTGCGTCTTATACACCAGAAGAAGTAGAGGAGTTCAAAAAATTTGCTGCAGAACCTGACGTGTACAAAAGCATATGTTCTAAGATTGCCCCCTCCATATTTGGTCATGATGATGTGAAGAAAGCTGTGGCTTGTCTTCTGTTTGGAGGATCTAAAAAGAATTTGCCAGATGGTGTGAAGCTAAGAGGTGATATCAATGTTTTACTTTTAGGAGATCCATCTACTGCTAAATCACAGTTTCTCAAGTTTGTTGAAAAGACAGCGCCCATTGCTGTTTATACTTCTGGGAAAGGTTCCTCTGCTGCTGGCCTTACAGCTTCTGTGATTAGAGATAATAGCTCTCGGGAGTTTTATCTTGAAGGAGGTGCCATGGTTTTGGCAGACGGTGGTGTTGTCTGCATTGATGAATTTGACAAAATGAGACCAGAGGATAGAGTTGCAATTCATGAAGCCATGGAACAGCAAACTATTTCCATTGCTAAAGCTGGAATAACCACAGTTCTTAATTCCAGAACCTCAGTCCTTGCAGCTGCTAATCCTCCGTCTGGACGTTATGATGATCTTAAGACTGCTCAGGATAACATCGATCTGCAGACGACCATTCTTTCTCGTTTTGATTTAATCTTCATTGTGAAAGATATCAGAATGTACAGTCAGGACAAGATTATAGCTAGCCATATAATAAAAGTTCATGCATCAGCTAATTCAACCAAGGGAGAAAATCGAGCTTCCAAAGAGGAGAATTGGCTGAAGAGGTATATACAATATTGCCGAACAGAATGCCACCCACGTTTGTCAGAATCTGCTTCCGTGATGCTCCAGAATAGTTATGTTAAAATCAGACAGGACATGAGGAAGCAGGCAAATGAAACTGGAGAGACTACTCCTATTCCCATAACTGTCAGGCAACTAGAAGCTATTGTCCGGATAAGCGAGGCACTAGCAAAAATGAAATTGTCACATGTTGCCACAGAGGAATATGTGCAAGAGGCTATACGTATATTTACTGTTTCTACTATGGATGCAGCACGGTCTGGGATCAATGATGTAGTAAATCTTACATCAGATATGGCAAATGAGATAAAGCAAGCAGAAACTCAGATCAAGAGAAGAATAGGGATTGGAAACCACATTTCCGAAAGAAGACTGATAGATGAGCTCACCAGAATGGGGTTGAATGAATCTATTGAACAAATACAATGTCCATGTACTGATATTTTAATTTCACGTGACAGGTACGCGGTTCTTGGTGCTGGCTTCGCCGGTCTCTCCGTTGCCTGGCATTTGTTGAAGCACAGTTCTGAGGGGGTAGATCTACATCTTGATATCTACGATGAAATTGGCATTGGTGGCGGTGCATCTGGAGTTTCTGGAGGGCTTCTTCACCCTTATTCTCCAAAAGGTAAACCTCTCCGGTGGGGTGTTGAGTGTTGGAATGAGTGCTTGAAGCTTCTAACCATTGCTGAAGCTGCAGCACAGTCAAACGAGTTGGATTGGGATACTAAAGACGATGGTCAAGTTGTTTGTAGTTCCATAGTAAGGAGAAGGGGCATTTTGAGGCCAGCACTGAGTATGAAGTCTTTGGTGTCATTGAGAGATAATGCTCAGAATTGCATACCCAGTTGCAGAGTAGAATCCATTGACCAGAACGCTAGCAGAGATCTTGTATGCAACCTATGTTTACCTCTAGACACGGCTTTTTACATGCCCGAAGCTGTAAATATCCATCCTCGACGCTATCTCGAGGCATTGTACTTAGCATGCCAAAATTTGGTGATGGAGTTGCCAAAGTCTAGCATTAGATTGCATAAAGAATCTGTTCATAAACTCCTTGATTTAGAAGGCGAATACGATGCAGTGATAGTTTGTTTGGGTGCCAAAGCCGATATGCTGCCCGAACTCTCCGGAAGGCTTCCTTTAAGAATGTGTAGAGGTGTTGTTACTCACCTGCAGCTCCCTGATCATATCTGTGATGTCTTTCTGGAATCGGCACCATCGATATTATCAGATGCATGGCTTGCAGTACAGGGGCCTCGAAGTTTACATATGGGCTCGACGTGGGAATGGGGATCGAGAAATTCATCCCCAGATGTCTTGGAAGATGAAAGCTTCAAAACTCTCGAAGAACTCGTGCCGAAAGTGTCGGTTTTTTATCCCAATATAAAGAATTGGACTTTTGCCGGAGCGAGGGCCGGTCTCAGGGCAATGCCGCCACTAACTTCCCTTGGATCACCTCCACTTTTGGGGCGTATAAATGATATTATAGGATGGAGTGATTGCCAATACTGGTTATTCGGACGACTTGGTTCTAGGGGATTGCTTTACCATGGATGGCTTGGAAAATTAACAGCACAAGCTGTGGTTGCAGGCGATGAAGAACTGCTTCCTCCTGAATTCATTTCTTGGAAGAAAAAAAGTGAGTAA | 3363 | 44.31 | MSGWDEGAIYYSDQAQSLGDGSSGGRIGDPESADATNYSVLRKFKEFIRSFETNKNVFPYRESLLHNPKFLCVDMEDLNAFDADLPDKLRSSPSDYLPLFETAAAEVVMNLRTKVAGETGEMVEPVPGDVQILLISKEDPVSMRSLGAQYISKLVKISGITISASRTKAKATYVTLLCKNCRSMQRVPCRPGLGGAIVPRSCNHVPQAGEEPCPLDPWIVVPDRSTYVDQQTLKLQENPEDVPTGELPRNMLLSVDRHLVQTIVPGTRLTIMGIYSIFQAANSSASHKGAVAVRQPYIRVVGMEEASEAKSRGPASYTPEEVEEFKKFAAEPDVYKSICSKIAPSIFGHDDVKKAVACLLFGGSKKNLPDGVKLRGDINVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDNSSREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKTAQDNIDLQTTILSRFDLIFIVKDIRMYSQDKIIASHIIKVHASANSTKGENRASKEENWLKRYIQYCRTECHPRLSESASVMLQNSYVKIRQDMRKQANETGETTPIPITVRQLEAIVRISEALAKMKLSHVATEEYVQEAIRIFTVSTMDAARSGINDVVNLTSDMANEIKQAETQIKRRIGIGNHISERRLIDELTRMGLNESIEQIQCPCTDILISRDRYAVLGAGFAGLSVAWHLLKHSSEGVDLHLDIYDEIGIGGGASGVSGGLLHPYSPKGKPLRWGVECWNECLKLLTIAEAAAQSNELDWDTKDDGQVVCSSIVRRRGILRPALSMKSLVSLRDNAQNCIPSCRVESIDQNASRDLVCNLCLPLDTAFYMPEAVNIHPRRYLEALYLACQNLVMELPKSSIRLHKESVHKLLDLEGEYDAVIVCLGAKADMLPELSGRLPLRMCRGVVTHLQLPDHICDVFLESAPSILSDAWLAVQGPRSLHMGSTWEWGSRNSSPDVLEDESFKTLEELVPKVSVFYPNIKNWTFAGARAGLRAMPPLTSLGSPPLLGRINDIIGWSDCQYWLFGRLGSRGLLYHGWLGKLTAQAVVAGDEELLPPEFISWKKKSE | 1120 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 6577186 | 6586324 | + | BLOR00598 | Blo01g00598 | 55038 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Blo01g00598 | 1120 | SMART | mcm | 139 | 653 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Blo01g00598 | 1120 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 435 | 449 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Blo01g00598 | 1120 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 375 | 390 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Blo01g00598 | 1120 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 487 | 499 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Blo01g00598 | 1120 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 514 | 522 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Blo01g00598 | 1120 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 463 | 476 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Blo01g00598 | 1120 | Pfam | FAD dependent oxidoreductase | 726 | 1098 | IPR006076 | GO:0016491 | |
| Blo01g00598 | 1120 | Gene3D | - | 315 | 669 | IPR027417 | - | |
| Blo01g00598 | 1120 | ProSitePatterns | MCM family signature. | 443 | 451 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Blo01g00598 | 1120 | Gene3D | - | 143 | 278 | IPR012340 | - | |
| Blo01g00598 | 1120 | CDD | MCM5 | 338 | 651 | - | - | |
| Blo01g00598 | 1120 | Gene3D | - | 36 | 121 | - | - | |
| Blo01g00598 | 1120 | PRINTS | Mini-chromosome maintenance (MCM) protein 5 signature | 294 | 306 | IPR008048 | GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Blo01g00598 | 1120 | PRINTS | Mini-chromosome maintenance (MCM) protein 5 signature | 170 | 182 | IPR008048 | GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Blo01g00598 | 1120 | PRINTS | Mini-chromosome maintenance (MCM) protein 5 signature | 570 | 585 | IPR008048 | GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Blo01g00598 | 1120 | PRINTS | Mini-chromosome maintenance (MCM) protein 5 signature | 144 | 159 | IPR008048 | GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Blo01g00598 | 1120 | PRINTS | Mini-chromosome maintenance (MCM) protein 5 signature | 646 | 663 | IPR008048 | GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Blo01g00598 | 1120 | SUPERFAMILY | Nucleotide-binding domain | 725 | 1011 | - | - | |
| Blo01g00598 | 1120 | Pfam | MCM N-terminal domain | 42 | 113 | IPR027925 | - | |
| Blo01g00598 | 1120 | Gene3D | - | 170 | 228 | - | - | |
| Blo01g00598 | 1120 | Pfam | MCM OB domain | 143 | 278 | IPR033762 | - | |
| Blo01g00598 | 1120 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 344 | 653 | IPR027417 | - | |
| Blo01g00598 | 1120 | Pfam | MCM P-loop domain | 322 | 544 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Blo01g00598 | 1120 | Pfam | MCM AAA-lid domain | 562 | 651 | IPR041562 | - | |
| Blo01g00598 | 1120 | SUPERFAMILY | Nucleic acid-binding proteins | 43 | 300 | IPR012340 | - | |
| Blo01g00598 | 1120 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 64 | 677 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Blo01g00598 | 1120 | ProSiteProfiles | MCM family domain profile. | 334 | 540 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Blo01g00598 | 1120 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM5 | 64 | 677 | - | - | |
| Blo01g00598 | 1120 | Gene3D | - | 828 | 1050 | - | - | |
| Blo01g00598 | 1120 | Gene3D | - | 727 | 1099 | IPR036188 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Blo01g00598 | Blo-Chr1:6577186 | Blo03g01396 | Blo-Chr3:40460436 | 3.39E-100 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Blo01g00598 | K02209 | - | csv:101211822 | 1250.73 |