Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00625 ATGACGAGCTGCATCAATGTTGCACCTGAGCAACTCTGCTATATACCCTGCAACTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAACAATTTGTTTGACATTGTCACAGTCCGATGTGGTCACTGCACAAATCTCTGGTCCGTGAACATGGCTTCTGCGATTCAGTCACTTTCATGGCAAGATCCCCAGGCTCAAAATTACTCTTACAATCCACCCGATCATCATCGAATCGACTCGGGTTCATCGTCAAAATGCAACAACAAGATAACACTTCGTCCTCCGACCAAAGCTTCAGCTGAGCAAAGACTTGTTAACCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTCATAAAGGAAGAGATTCAGAGGATCAAAGCGAACAACCCAGATATTACCCACAGGGAAGCATTCAGTACTGCTGCAAAAAATTGGGCACATTTCCCTCATATTCACTTTGGACTGATGCTAGAAACTAACAACCAGACCAAGGCAGATCACTCAGTAAGTGTTTGA 534 44.57 MTSCINVAPEQLCYIPCNFCNIVLAVSVPCNNLFDIVTVRCGHCTNLWSVNMASAIQSLSWQDPQAQNYSYNPPDHHRIDSGSSSKCNNKITLRPPTKASAEQRLVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDITHREAFSTAAKNWAHFPHIHFGLMLETNNQTKADHSVSV 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6967807 6970105 + BLOR00625 Blo01g00625 55065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00625 177 Pfam YABBY protein 8 161 IPR006780 GO:0007275
Blo01g00625 177 PANTHER PROTEIN YABBY 6-RELATED 1 173 IPR006780 GO:0007275
Blo01g00625 177 CDD HMG-box 115 151 - -
Blo01g00625 177 Gene3D High mobility group box domain 97 156 IPR036910 -
Blo01g00625 177 PANTHER AXIAL REGULATOR YABBY 5 1 173 - -
Blo01g00625 177 SUPERFAMILY HMG-box 99 154 IPR036910 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00625 Blo-Chr1:6967807 Blo02g01054 Blo-Chr2:40693906 1.54E-53 dispersed
Blo14g00771 Blo-Chr14:23660301 Blo01g00625 Blo-Chr1:6967807 4.12E-93 transposed
Blo01g00625 Blo-Chr1:6967807 Blo16g00898 Blo-Chr16:36804288 1.21E-104 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11867 PF04690 YABBY 9.60E-70 CL0114 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00625 K25796 - pvy:116130315 299.286