Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00722 ATGACCAAATCATTTCTGAGCTATGTAGAACTAAAGAAACAAGCAATGAAGGATTTGGAAGCTGGGCCAGACATCGAGATGGGGAAACTTGACCCTGCAGATGAACAAAATCTCTCGCACTTTTTTGAAGAAGTTGGTGCGATCAAAGCAAGCATGGAAGAGATCACTAATCTTCTCTTCGACCTTCAAAACCTGAACGAAGAGGCGAAATCCATTTATAATGCCAATGCTCTTAGTGGAGTCAGAGAAAAAATCAACTTAGACATGGTCGAGGTTCTTCGAAAGGCAAAAAATATCAAAACGAAGCTTGGATTTCTTGATCAATCCAATATCGCCAATCGAAAAGTATCAAAATCTTACAAAGAAGGAAGCCCAGTTGACAGGACGAGAATTTCTGTTACGAACGGGCTGAGAATTAAACTGAGAGATATGATGAATGATTTTCAAGCATTGAGAGAGCAGATTCTGAAGGATCACAAAGAGGGTCTGAAGAGAAGGTATTTTGCTGCAACTGGAGAAGAAGCTAGCGAGGAAGCCATTGAAAGGATGATTTCAGAAGGTGGGAAAGAGAAGATCTTTGAAGGGAAAAAAGACTTGTTAATGGAGAATGAGGAGAGAGAAGAGGGTTTGAAGGAGATACAGAGGAGCCTGAAGGAGCTTCATCAGGTTTTTCTTGATATGGCTGTTCTGGTGGAAACTCAAGGAGAGCACATGAATAATATTGAGCAGAATATGAGTTGGGCTGGAGCTCATATCCAGGATGGAACAAAGGAGCTGTTGGATGCCAAGAAATTGAAGAGCAGAGCTCAATGGACTTACTGGATTGTAGCTCTGGTTTTAATTCTGCTGTTCATTTGCCTTATTTCTACATTGGTTTACTAA 882 40.82 MTKSFLSYVELKKQAMKDLEAGPDIEMGKLDPADEQNLSHFFEEVGAIKASMEEITNLLFDLQNLNEEAKSIYNANALSGVREKINLDMVEVLRKAKNIKTKLGFLDQSNIANRKVSKSYKEGSPVDRTRISVTNGLRIKLRDMMNDFQALREQILKDHKEGLKRRYFAATGEEASEEAIERMISEGGKEKIFEGKKDLLMENEEREEGLKEIQRSLKELHQVFLDMAVLVETQGEHMNNIEQNMSWAGAHIQDGTKELLDAKKLKSRAQWTYWIVALVLILLFICLISTLVY 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9192879 9193760 + BLOR00722 Blo01g00722 55162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00722 293 Pfam SNARE domain 238 285 IPR000727 -
Blo01g00722 293 SUPERFAMILY t-snare proteins 37 255 IPR010989 GO:0016020|GO:0016192
Blo01g00722 293 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 200 262 IPR000727 -
Blo01g00722 293 Gene3D - 194 292 - -
Blo01g00722 293 CDD SynN 38 188 IPR006011 GO:0016020
Blo01g00722 293 CDD SNARE_syntaxin1-like 204 259 - -
Blo01g00722 293 Coils Coil 48 68 - -
Blo01g00722 293 Pfam Syntaxin 41 235 IPR006011 GO:0016020
Blo01g00722 293 ProSitePatterns Syntaxin / epimorphin family signature. 206 245 IPR006012 GO:0005484|GO:0006886|GO:0016020
Blo01g00722 293 SMART tSNARE_6 195 262 IPR000727 -
Blo01g00722 293 Gene3D - 33 163 - -
Blo01g00722 293 SMART SynN_4 33 160 IPR006011 GO:0016020
Blo01g00722 293 PANTHER SYNTAXIN-112 8 289 - -
Blo01g00722 293 PANTHER SYNTAXIN 8 289 IPR045242 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00722 Blo-Chr1:9192879 Blo15g00703 Blo-Chr15:22339372 0 dispersed
Blo17g00576 Blo-Chr17:10693580 Blo01g00722 Blo-Chr1:9192879 1.73E-10 dispersed
Blo01g00722 Blo-Chr1:9192879 Blo04g00912 Blo-Chr4:10701857 1.12E-116 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00722 K08486 - csin:114258522 413.305