Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00742 ATGGAACTTGCAGCTTATCCTATTGTCCTCCGGAAAAGGCGTTACACGCTTGTTCATTCATTGTATCGACAAGCAAACGTCGGCGACTCACTTCTCGCCTCCTTACTCTCCGACAAATCCTCCTCCGCCACCGAGACTCGACCACCCACTTCTCAATCCGCGGCGCAAACCATGTCCATTGCTCTCTCGCCTCCATCTTTCAAAAATGCCCACTTATCCCCTCTCCTATCTACCTATCCCTGCTTAAATTTCCCTTCCTTTCGACGACACGACCGCTGCCATAATCGCCGTCGCTTACCAACTCTCGTCACCGCCTCTGCCCGTCAAGACACCGCTGTTTGGGTTGAAGCTCCTATCACACAAGTGGAGCCCGTCGCCGAGTCTCTCTTTCACGTGACGGTGGACGTCGCCGGCTCCGGTGACCTCGCCGCCTCTTTTACTCGCGCCGGCCAGTATCTTCAGCTCCGCGTGCCCAAAGCTCCGAAGCCGTCGTTTTTAGCCATAGCGTCGCCGCCCTTGCTCGCAACTTCCAGAGGCGTATTCGAGTTCTTGGTGAAGAATGTGGAGGGTTCGACTGCTGAGCTGCTCTGTGGATTGGGGAAAGGGGATGTTGTGGAGCTAAGTCAGGTTATGGGGAAGGGATTCGATGTGGATCGGATTGGACCCCCTCAGGATTACCCTACCGTCCTGATTTTCGCCACTGGTTCCGGAATCAGTCCAGTCCGATCTCTCATCGAGTCAGACTTTAGTGTCAACAAGAGATCTGACGTGAGGCTCTATTATGGGGCCAGAAACCTGAAGAAAATGGCTTATCAGGATAGATTTAAAGATTGGGAATCTTTCGGCGTTGAGATCGTTCCAGTTTTATCACAACCCGATGATAATTGGAGTGGTGAAACTGGCTATGTACAGGCGGCCTTTGCTCGATCCAAGTCATTAATTGACCCTCTATCGACCGGTGCTGTACTTTGCGGCCAGAAAGAGATGAACGAGCAAAGACAAAATGGCTCAGTCAAAGCTCTAAGGGATCAAATTCTCAGTCTCAAAACTTCCTTCTCCCAATTTTCACCGCTTTTTCCTCCCCTCCGTTGCTCTTCTTCTTCTTCCCGGTCTCTTTTGGAATCTGTTATTTTTTGGCCGGAAATGGCTTCCTCCTCGGGTTCCAGCACTACAAACGTCATGCTCGCTATCTACGAGAAGAAGACGACTCAAATCGACCTTTACCGTCCACTCCGCAACTTCATCGCCTTCCACTACTCTGAACGCGAAGCTCAAAACCTCGAAGACGACCTCCAAACCCTCAAACAGTACCGTTCAGACCTCGAGCGCCAATCCGACCCCTCCCCGACCTCCCGTCGTGATCTCCTTCAGAATTACTTCAAAGCCCTATGCCTTGTTGAATCCCGTTTCCCAATCTCGCCTGACAAGGACCACATTAATACTCTCACATTCGTGTGGTTCGATGCGTTTAAGCAGAAGCAGAAGGCTTCGCAGCAGAATATTCATCTGGAGAAGGCTGCGGTTTTGTTCAATTTGGGTTCCGTTTACAGCCAGATTGGTCTTTCGTATGATCGCTCTACTGTTGAAGGGAGACGTCAAGCCTCACACGCTTTTATAACTGCGGCTGGGGCCTTTGCTTTCTTGAGAGACAATGCCGCAACTAAGGCCTCAATTGGAAGCTCGACGACGGTGGATGTATCAGTTGAGTGCAGTGGAATGTTGGAGCGGTTGATGCTTGCTCAGGCGCAGGAGTGTGTATTCGAGAATACCATTGCCAAAGGGAGTACGCCAGGTGTTTGTGCAAAAATCTCTAGGCAGGTTGGGTTGTACTATGAAGAAGCTTTGGCAGCACTTAATGCTCCACCTCTCAACCAGCATTTTGAGAAGTCTTGGATTTATCATGTGCAACTAAAAGCATCTCTTTTTTATGCTGAAGCTTGTTATCGATGTGGTATGGAGCTCCACGAGAAAGAAGAAATTGCTGAAGAAATTGCCCGGTTGAGAAGTGGGATTAATGCTCTAAATGAGACCAAAAAGACCTCAAAAGGTGCTGCAGCACAACTCCTGGAAGCTGTTAGCAAGTTAGAGGCCAATTTAAATCATAATTTGGAGAGGGCAGTAAAAGAGAATGATAGAGTTTACCTCATGAGGGTTCCTAATCCAAGTTCTTTGCCGCCTCTCCCAGCCTTTTCAATGGTAAAGCCAATGGCGATGAATGAAGTGTTGGATGCAAGCAAGGAGAAAATGTTTGCAAGTCTTGTGCCAGATAGCAGTGCAAAAGCTCTTTCCAGGTACACTGAAATGGTTGATGATATAATCAGGACACAAGCTGAAAAACTTCAACAAGCTAGTGAACTAACTCGAGTAAAGCTCAAGGAAATGGATCTACCAGATTCTATATTGGCTTTGGATGGAAATTTTACTTTGCCTATTGAGCTTAAAGAAGAAGTGGAAGCAGTACAGATTAGTGGGGGACCAGCAGGTTTGGAAGCTGAGTTACAACAGTTTAGAGGCCAATTTGGGACACGATGGACTAGGCCTCACTCCAACACTTTGACAAAGAACTTGCAGGATAGGTTGAATAAATTTGCAAGCAACTTGAAGCAGGCTGCAGATAGTGATGGTAGAATAGAGCGTTCTGTCAGAGAACATGCAGCTTTCATGTCAATTCTTGATAAACGACCAATTGAATCTGCCCTCCCAAGTTTGGCTAGACCCATTATGTCTTTAGATGCCAATGAAGATGTCGTTGTGGGAGATCTGAAGCAGAGCTTGAGGCAATTAGAAACTCTTGGTGCTCAACGAGCTGGTCTAGAAGACATGCTTAAAGAGATGAAAAGGAAGAGCATGGCAAAGCCTACGACTAGAGGAGACCGAATGGAAGAAATGGAGAGAGAGATGCTTGGAATAGGTTTAGACTTGGAAAAAAATGTTGAGAAGTGGCATACATTGCATCAGCAGATGTCGATTCTGCCACGAATAGAAGCTATATTACCCAAAGTGGAGGAAGTATTTCGTTTACTGTCGGAACTAAGGGCGGACATTAACCAGTTACGGTCAGAGTTCCAAAGCCCTCTGGTTGTTACACCGAACGTCAGTCTAACTTTCGACAAAGGAAAAGGGATACTGGGTATGGATGATTCTGACTCCCGTAACATTAACCGGCCGACAGATGACATTGATCAAGGGTGTTTGCCGGTGGTGGGTCGACGCGAGGAGCAGCAATACCGCGAACTAGGGTGTCCGCCGATTGTGGGTAGACGTGAGGAGCCAAGAGAGAATTATGAAGATTATCTTCTTGAGAATGGGAATGGGAATGAGAATGGAGTTTGTTTCCAAACTTATGGTTTCCGGGATAATATTCTACCAAAGTTAATGACATCAACTGGTTCCTATGAAGATCTTTTCAAGAAGGAGATTTCCAAATATGAGCATATTTGTGGGGACATTGCTCAAAACATCGAAGCTCAAGAACAATTGTTGCTGCAAATTCAGGCACAGAACGATGATTTTGCTTCCTTATTTAATCTTGAAGATTATAAAGTATCTCGCCAAAGATGTTACAAGCAGATTGAAGCTGCAATAGCCAAGTATCGGGAAATCAAGGACAACATCAACGAAGGATTAAAATTCTATGTTACTCTTCAGGAAGCAATCACAAATATGAAGCAGCAATGCAGTGATTATGTGATGACAAGAAACATCCAATGCCGAGAAATGATCGAAGATGTCCAAAGACAATTGGCAGGTTTCAATTTCCAGGATGGAAAAGGTGCAGGAGCTTATAACTACCCTCCGACAGGGAATCAACCTCAAAGATCCAACTCTCAGCCACAGTCTGACCCTCGACCACCGGCATCCTATTACCAACCCTCTGATCAGCCAATGGGTCCCGGCTATGCATCCCCCATGTATAACTCCACAAATCAGCCACCCCCTCCTTACCATATGCCACCTTCATCCGGCCCATATCCACCTCCACAAACTAATCAGGCAGCTCCGGCAAGTCACGAGTATGGCCAGCCAGCCTACCCTGGGTGGAGAGGCCCGTATTACAATGCCCCTGCACAGCAACCAGGCTCTGCTCCTCGCCCTCCCTACACCATTCCAGCTCCGTACCCACCTCACCAAAGTGGTCACTACAAGCCTCAATAA 4155 47.32 MELAAYPIVLRKRRYTLVHSLYRQANVGDSLLASLLSDKSSSATETRPPTSQSAAQTMSIALSPPSFKNAHLSPLLSTYPCLNFPSFRRHDRCHNRRRLPTLVTASARQDTAVWVEAPITQVEPVAESLFHVTVDVAGSGDLAASFTRAGQYLQLRVPKAPKPSFLAIASPPLLATSRGVFEFLVKNVEGSTAELLCGLGKGDVVELSQVMGKGFDVDRIGPPQDYPTVLIFATGSGISPVRSLIESDFSVNKRSDVRLYYGARNLKKMAYQDRFKDWESFGVEIVPVLSQPDDNWSGETGYVQAAFARSKSLIDPLSTGAVLCGQKEMNEQRQNGSVKALRDQILSLKTSFSQFSPLFPPLRCSSSSSRSLLESVIFWPEMASSSGSSTTNVMLAIYEKKTTQIDLYRPLRNFIAFHYSEREAQNLEDDLQTLKQYRSDLERQSDPSPTSRRDLLQNYFKALCLVESRFPISPDKDHINTLTFVWFDAFKQKQKASQQNIHLEKAAVLFNLGSVYSQIGLSYDRSTVEGRRQASHAFITAAGAFAFLRDNAATKASIGSSTTVDVSVECSGMLERLMLAQAQECVFENTIAKGSTPGVCAKISRQVGLYYEEALAALNAPPLNQHFEKSWIYHVQLKASLFYAEACYRCGMELHEKEEIAEEIARLRSGINALNETKKTSKGAAAQLLEAVSKLEANLNHNLERAVKENDRVYLMRVPNPSSLPPLPAFSMVKPMAMNEVLDASKEKMFASLVPDSSAKALSRYTEMVDDIIRTQAEKLQQASELTRVKLKEMDLPDSILALDGNFTLPIELKEEVEAVQISGGPAGLEAELQQFRGQFGTRWTRPHSNTLTKNLQDRLNKFASNLKQAADSDGRIERSVREHAAFMSILDKRPIESALPSLARPIMSLDANEDVVVGDLKQSLRQLETLGAQRAGLEDMLKEMKRKSMAKPTTRGDRMEEMEREMLGIGLDLEKNVEKWHTLHQQMSILPRIEAILPKVEEVFRLLSELRADINQLRSEFQSPLVVTPNVSLTFDKGKGILGMDDSDSRNINRPTDDIDQGCLPVVGRREEQQYRELGCPPIVGRREEPRENYEDYLLENGNGNENGVCFQTYGFRDNILPKLMTSTGSYEDLFKKEISKYEHICGDIAQNIEAQEQLLLQIQAQNDDFASLFNLEDYKVSRQRCYKQIEAAIAKYREIKDNINEGLKFYVTLQEAITNMKQQCSDYVMTRNIQCREMIEDVQRQLAGFNFQDGKGAGAYNYPPTGNQPQRSNSQPQSDPRPPASYYQPSDQPMGPGYASPMYNSTNQPPPPYHMPPSSGPYPPPQTNQAAPASHEYGQPAYPGWRGPYYNAPAQQPGSAPRPPYTIPAPYPPHQSGHYKPQ 1384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9726592 9739936 - BLOR00742 Blo01g00742 55182

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00742 1384 PANTHER PROGRAMMED CELL DEATH 6-INTERACTING PROTEIN-LIKE 386 835 - -
Blo01g00742 1384 PANTHER PROGRAMMED CELL DEATH 6-INTERACTING PROTEIN-LIKE 1118 1374 - -
Blo01g00742 1384 SUPERFAMILY Riboflavin synthase domain-like 114 214 IPR017938 -
Blo01g00742 1384 PANTHER PCD6 INTERACTING PROTEIN-RELATED 835 953 IPR045251 GO:0071985
Blo01g00742 1384 CDD BRO1_Alix_like_1 394 749 - -
Blo01g00742 1384 Gene3D alix/aip1 like domains 389 754 IPR038499 -
Blo01g00742 1384 Gene3D alix/aip1 in complex with the ypdl late domain 1119 1175 - -
Blo01g00742 1384 Gene3D alix/aip1 in complex with the ypdl late domain 755 800 - -
Blo01g00742 1384 Gene3D alix/aip1 in complex with the ypdl late domain 905 1003 - -
Blo01g00742 1384 Coils Coil 657 677 - -
Blo01g00742 1384 MobiDBLite consensus disorder prediction 1265 1283 - -
Blo01g00742 1384 Pfam ALIX V-shaped domain binding to HIV 1118 1235 IPR025304 GO:0005515
Blo01g00742 1384 Pfam ALIX V-shaped domain binding to HIV 831 997 IPR025304 GO:0005515
Blo01g00742 1384 PANTHER PROGRAMMED CELL DEATH 6-INTERACTING PROTEIN-LIKE 835 953 - -
Blo01g00742 1384 MobiDBLite consensus disorder prediction 1307 1330 - -
Blo01g00742 1384 PANTHER PCD6 INTERACTING PROTEIN-RELATED 386 835 IPR045251 GO:0071985
Blo01g00742 1384 PANTHER PCD6 INTERACTING PROTEIN-RELATED 1118 1374 IPR045251 GO:0071985
Blo01g00742 1384 Gene3D Translation factors 107 212 - -
Blo01g00742 1384 MobiDBLite consensus disorder prediction 1359 1384 - -
Blo01g00742 1384 Coils Coil 928 948 - -
Blo01g00742 1384 Coils Coil 685 709 - -
Blo01g00742 1384 Pfam BRO1-like domain 394 772 IPR004328 -
Blo01g00742 1384 PRINTS Phenol hydroxylase reductase family signature 147 159 - -
Blo01g00742 1384 PRINTS Phenol hydroxylase reductase family signature 255 264 - -
Blo01g00742 1384 PRINTS Phenol hydroxylase reductase family signature 230 249 - -
Blo01g00742 1384 SMART BRO1_2 393 777 IPR004328 -
Blo01g00742 1384 CDD FNR_like 122 331 - -
Blo01g00742 1384 ProSiteProfiles BRO1 domain profile. 393 787 IPR004328 -
Blo01g00742 1384 Gene3D - 226 346 IPR039261 -
Blo01g00742 1384 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 223 334 IPR039261 -
Blo01g00742 1384 Gene3D alix/aip1 like domains 1176 1224 - -
Blo01g00742 1384 Gene3D alix/aip1 like domains 833 904 - -
Blo01g00742 1384 Gene3D alix/aip1 like domains 801 832 - -
Blo01g00742 1384 MobiDBLite consensus disorder prediction 1259 1384 - -
Blo01g00742 1384 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 112 217 IPR017927 GO:0016491
Blo01g00742 1384 Coils Coil 424 444 - -
Blo01g00742 1384 Pfam Oxidoreductase NAD-binding domain 233 332 IPR001433 GO:0016491
Blo01g00742 1384 Coils Coil 1001 1021 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00742 K12200 PDCD6IP, ALIX, RIM20; programmed cell death 6-interacting protein - jre:109007972 937.947
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g00742 Blo16g00725 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00742 Blo-Chr1:9726592 Blo07g00819 Blo-Chr7:26247160 5.25E-52 dispersed
Blo01g00092 Blo-Chr1:1270239 Blo01g00742 Blo-Chr1:9726592 1.25E-64 transposed
Blo01g00978 Blo-Chr1:26203628 Blo01g00742 Blo-Chr1:9726592 2.88E-15 transposed
Blo11g00758 Blo-Chr11:10341028 Blo01g00742 Blo-Chr1:9726592 8.61E-112 transposed
Blo01g00742 Blo-Chr1:9726592 Blo16g00725 Blo-Chr16:28153652 4.88E-128 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g393 Blo01g00742 Blo16g00725 . Bda11g00157 Bpe13g01041 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0415 Cone9ag0438 . Csa05g02045 . . . . . Bda11g00157 . . Bma01g00446 Bma06g01101 . . Cmo15g00979 . Cma15g00940 . Car15g00882 Cpe13g00383 . Bhi12g00868 . . . . . Lcy10g1452 Cla01g00590 Cam01g0617 Cec01g0607 Cco01g0633 Clacu01g0609 Cmu01g0582 Cre09g1923 Lsi09g00639 . Chy09g00875 Cme09g01408
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015544 0 0 9 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00742 Blo_Chr01 FPKM 6.494755 6.76042 16.730337 19.353811 3.418032 2.284752 3.405736 8.791026 9.018052 9.13379