Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00756 ATGAATCTTGATCCTATTATTCCACCGCCATTTAATAGGCTTCCAGTAAGGCCGCACAAACGTAGAATACGGGATGTGGACGAGGCTCCAAGCAGGACAGTGCTAACTAGAAGAAGTTTGACCGTCACTTGTGGTCAGTGTGGGCGTGTTGGGCACAATTCTCCCACATGCGATAGTGGAGGTGAGTCAAATGCTGGGCCTTGCAGAGGGCGCGGCAGAGGTAGGGGCGGCAGAGGCAGGTCAGAGGGAACATTTATGGGGTTCAGAGTTCCTGAGACAGCCCCCGAGACAATTCCTAACCTAGTTCCTGAGACAGCTCTCGACAAAGTTCCTTACACGCAGGTATGGGTGTGGTTATGGTCGGCTATTGTAATGTTAGGTTCTGTGCATAGAATCTACACGTATTGTTGTGGGGAGACGCTAGTGTCACCTGGTGGGTGCTTCGATCTTACCGTAGATGGGTGGATGATCGTCGGTTCAATCCTTTCATCTCTAAAGAGAACCGTATCTCTTCTGGAAGTTAAGGTGGAATACTCCCTAGAGTCATGTGGCCTAACCAGTCACTCCGACAAGGAGATATATCCATCGGGGGTGTTACCACAAGCAGGTATCCTCAGTTTTGTTGAAGACATTGGGGGTTTCAGAACGAGTCGTCTCGTGTCTCTGTCTCGTCGTCGTCGCGAGATCGTCCCGCAGGCCGCAATCATCAGTCGCGAGGTCGTCTCCGTCCGCCGTCCCGCAAGCTACAATCGCCTCGGTCTCGACTCTCGCATCGTCGCGAGATCCTCAGGCCGCGATCTCCATCTCGCGTCATCGCGAGACCGTCAGTTGGCACCCGCTCATTGCACTGCAATGTCTGCAAATTTTGTTTTTGTAATGCACTTTGATGATTTTGGCTTGGCAGTGCATAATTCTGCACTGGGCTCAAGTCATTCCGATTTGAAATTGATGCCAGCAATTATTGCTGGCTACACAAGTGATCAGACTCTGGCTGAAACAGTTGCTAATGTTCTAACTTCACTTCCATTCATTTTTCTTGGAATTCAAGCTCCTAGGAAGAATCATTGCACTAAGTTATATGCTAATTCACTGATTGGTGTTGGAGTTGCCTCAAGTTTGTATCATACTTCTAGAGGAAAACTCAGGAATTATTTAAGATGGGTTGACTATACAATGATAGCTACAACCACTGTATGTTTATCAGGCGCTTTGAGAAATGACAACCCGAAGTTACTGATGGCAGCTTCTGCATTTTTACTTCCTGTCCAGCCTTTTATGGTTTCAGCGTTTCACACAGGGATGATGGAGGTAGTAGCATTTGCAAAACGGGCGTTGAAAGATCAAGATCTAAGGATGGCACACAACATCCACAAGATGTCAACAGTGTTAGGAGGTGTTCTTTTCCTCGCTGATGACGTTTTTCCGAAGACTCCATTCCTTCATGCTGCTTGGCATCTCGCTGCAGCCATTGGAGTCGCTCTCATATCTAAACAACCAAGGATAGATTCAAACGGAAAACCCTTGACAAGTTTGCGATGGAATCCAACGCCGGAGCAACTCTTTGCGCTCGAGGAACTTTATCGATCCGGAACTCGAACACCCTCCGCCCAACAAATCCAGCAAATCACCTCTCATCTTCGTCGATTTGGAAAGATTGAAGGGAAGAATGTTTTTTACTGGTTTCAGAACCACAAAGCCAGAGAACGACAGAGACGCTCCCGAGAAATGAAATGTATATCGAGAGGAAACCATTGGAATGTCGGAAGCTCCCATGACAAGATCAGTGAAACAGGGTTGAGGAGGAAAAGCCAAGAGTTTGGACAGGCAAAGACGTGGATGCCTCATTTGAAAAGCAGCAATACACTTCCAAATCAGGAATCTTCGTCAAAGTCTACGGCTGCAATGGCGAAGGAGTTCAGACGTTTTAGGGTTTTTGAAGGTGTAGACGGTTTACCAAGTAAACAAACAGCATGGAAATCAAAGGGAGCTTCATGTTCTCCTGCAAATCCAAACACATTACTTACACCCTCTTCGCAAATCCAAGGTGAAATTTCATTCCCAAGCAGAACGAAGGTTGAGGGAGAAATACAAACGCTGGAGCTTTTCCCACTTGAAGGCGGGTGCAAGAGTGGCAACGGAGTTCATTTTGTTGGGGAGGTCCAAGCAGGCATCGACAGAAGTAGTAACCTCAGTTCAAGCCAGTTTTTCGAGTTTCTTCCCCTTAAAATCTAA 2232 47.18 MNLDPIIPPPFNRLPVRPHKRRIRDVDEAPSRTVLTRRSLTVTCGQCGRVGHNSPTCDSGGESNAGPCRGRGRGRGGRGRSEGTFMGFRVPETAPETIPNLVPETALDKVPYTQVWVWLWSAIVMLGSVHRIYTYCCGETLVSPGGCFDLTVDGWMIVGSILSSLKRTVSLLEVKVEYSLESCGLTSHSDKEIYPSGVLPQAGILSFVEDIGGFRTSRLVSLSRRRREIVPQAAIISREVVSVRRPASYNRLGLDSRIVARSSGRDLHLASSRDRQLAPAHCTAMSANFVFVMHFDDFGLAVHNSALGSSHSDLKLMPAIIAGYTSDQTLAETVANVLTSLPFIFLGIQAPRKNHCTKLYANSLIGVGVASSLYHTSRGKLRNYLRWVDYTMIATTTVCLSGALRNDNPKLLMAASAFLLPVQPFMVSAFHTGMMEVVAFAKRALKDQDLRMAHNIHKMSTVLGGVLFLADDVFPKTPFLHAAWHLAAAIGVALISKQPRIDSNGKPLTSLRWNPTPEQLFALEELYRSGTRTPSAQQIQQITSHLRRFGKIEGKNVFYWFQNHKARERQRRSREMKCISRGNHWNVGSSHDKISETGLRRKSQEFGQAKTWMPHLKSSNTLPNQESSSKSTAAMAKEFRRFRVFEGVDGLPSKQTAWKSKGASCSPANPNTLLTPSSQIQGEISFPSRTKVEGEIQTLELFPLEGGCKSGNGVHFVGEVQAGIDRSSNLSSSQFFEFLPLKI 743
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10156514 10173765 + BLOR00756 Blo01g00756 55196

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00756 743 PANTHER FOLD PROTEIN 319 497 - -
Blo01g00756 743 PANTHER FOLD PROTEIN 319 497 - -
Blo01g00756 743 ProSiteProfiles 'Homeobox' domain profile. 516 571 IPR001356 GO:0003677
Blo01g00756 743 CDD homeodomain 512 569 IPR001356 GO:0003677
Blo01g00756 743 MobiDBLite consensus disorder prediction 53 85 - -
Blo01g00756 743 Gene3D - 503 570 - -
Blo01g00756 743 SMART HOX_1 508 575 IPR001356 GO:0003677
Blo01g00756 743 Pfam Homeodomain 511 570 IPR001356 GO:0003677
Blo01g00756 743 SUPERFAMILY Homeodomain-like 510 576 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00756 - - - qsu:112025478 283.878
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00756 Blo-Chr1:10156514 Blo05g00446 Blo-Chr5:6170543 1.36E-48 dispersed
Blo06g00628 Blo-Chr6:29252393 Blo01g00756 Blo-Chr1:10156514 1.20E-16 dispersed
Blo10g00145 Blo-Chr10:1667933 Blo01g00756 Blo-Chr1:10156514 5.55E-15 dispersed
Blo13g01096 Blo-Chr13:33107554 Blo01g00756 Blo-Chr1:10156514 8.48E-26 dispersed
Blo16g00107 Blo-Chr16:2484489 Blo01g00756 Blo-Chr1:10156514 4.88E-13 dispersed
Blo16g00114 Blo-Chr16:2683378 Blo01g00756 Blo-Chr1:10156514 4.12E-38 dispersed
Blo17g00722 Blo-Chr17:21556590 Blo01g00756 Blo-Chr1:10156514 2.01E-20 dispersed
Blo18g00647 Blo-Chr18:11829088 Blo01g00756 Blo-Chr1:10156514 3.08E-24 dispersed
Blo01g00756 Blo-Chr1:10156514 Blo02g00817 Blo-Chr2:28947337 6.62E-48 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g436 Blo01g00756 . . . . . . . . . . . . . . . Cpe01g01847 . . . . . . . . . . . . . . Cone13ag0758 Cone19ag0762 Cone6ag0393 Cone9ag0419 . Csa05g02021 . . . . . . . . . . . . Cmo15g00997 . Cma15g00958 . Car15g00902 Cpe13g00367 . Bhi12g00907 . . . . . . Cla01g00611 Cam01g0639 Cec01g0631 Cco01g0658 Clacu01g0629 Cmu01g0602 Cre09g1900 Lsi09g00662 . Chy09g00515 Cme09g01382
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006606 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11876 PF00046 Homeodomain 4.80E-18 CL0123 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00756 Blo_Chr01 FPKM 21.896826 21.115221 38.186176 35.924862 94.173286 87.186531 93.650101 19.6502 20.360008 21.375479