Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00789 ATGTTGGATACCACTGTTTCTTCTGATCATCCATCTTCCTTTGCGTCCTTCGAAAATGGGGTCACTTGCAAAAGGAAAAGAAGACCAGCAGGAACCCCAGATCCAGACGCAGAAGTGGTTTCTCTATCTCCAAGGACTTTGCTGGAATCAGATCGATACTTGTGTGAGATCTGCAATCAAGGGTTTCAGAGAGATCAGAATCTGCAGATGCATAGGAGGAGGCATAAGGTGCCGTGGAAGTTGTTGAAAAGGGAGACGGAGGAGGTGAGGAAGAAGGTGTTTGTTTGCCCTGAGCCGACGTGCTTGCACCACGACCCTTGCCATGCTCTCGGCGACCTCGTCGGAATCAAAAAACATTTCCGGCGGAAACACAGCAATCACAAGCAGTGGACTTGTGACAAATGCTCCAAAAGCTACGCCGTTCAATCCGATTACAAAGCCCATCTCAAAACTTGTGGCACTAGAGGTCACTCCTGCGACTGTGGCCGTGTGTTTTCCAGAGTGGAGAGTTTCATCGAGCACCAAGATGCTTGCACTGTCCGGCAGGTGAGGCCTGGGATGCCGGCGACCCAGCCAGCCTGCTCTTCCCGATCAGCTTCTAGCACTAGCCCTTCCACTGACGCAGATTTCGGCAAGGCTACAATGCCGAAGCTTCACAGTAGGCCAACTCAACCAATATTCTTGAGATCGGATCAAATGAATTATAATTATTCTTCCTCTACGTCTGGTTTCCAAGAACATAATCTCGAACTTCAGCTCCTTCCGATGTCGCCATATCCGGACGAAATCTTTGCCACCCACCTGAAACTTTCGATCGGATCATCAACCGAAGGTGGCAGAAAGGAAGAAATAAAGAAACAGGTTTCAGAAACCCGGGAGAAAAATGATATTCCTGCACTGGAAGTGATGAGGTTGAGAGAATATTCAACTGAAAATCTAAGGAAGTTAGCAATGGCTGAAATGGCTTACGCAGAAGAAGCCAGACGAGAAGCCAAACGACAAATCGAAATTGCTGAGATGGAATTCGGAAACGCAAAAAGAATAAGGCAACAAGCCATAGCCGAGCTCGAAAAGGCAGAGATTTTGAAAGAGAACGCAACGAGGAAGATGAGCTCCACCATTCTGCAAATCACTTGTCAAGCATGCAAACAACAATTCCAGCAGCCGTCGGTGGCGGCACTGGCGCCGTCGGACGAGACCTCCCTGGCGATGAGCTACATGTCCTCCGCCACCACCGAAGGCGAGGGATAA 1251 49.16 MLDTTVSSDHPSSFASFENGVTCKRKRRPAGTPDPDAEVVSLSPRTLLESDRYLCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETEEVRKKVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWTCDKCSKSYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACTVRQVRPGMPATQPACSSRSASSTSPSTDADFGKATMPKLHSRPTQPIFLRSDQMNYNYSSSTSGFQEHNLELQLLPMSPYPDEIFATHLKLSIGSSTEGGRKEEIKKQVSETREKNDIPALEVMRLREYSTENLRKLAMAEMAYAEEARREAKRQIEIAEMEFGNAKRIRQQAIAELEKAEILKENATRKMSSTILQITCQACKQQFQQPSVAALAPSDETSLAMSYMSSATTEGEG 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11529792 11531481 + BLOR00789 Blo01g00789 55229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00789 416 ProSitePatterns Zinc finger C2H2 type domain signature. 55 75 IPR013087 -
Blo01g00789 416 SMART c2h2final6 53 75 IPR013087 -
Blo01g00789 416 SMART c2h2final6 94 124 IPR013087 -
Blo01g00789 416 SMART c2h2final6 130 157 IPR013087 -
Blo01g00789 416 Coils Coil 314 369 - -
Blo01g00789 416 Gene3D Classic Zinc Finger 30 97 - -
Blo01g00789 416 ProSiteProfiles Zinc finger C2H2 type domain profile. 53 75 IPR013087 -
Blo01g00789 416 PANTHER ZINC FINGER PROTEIN SHOOT GRAVITROPISM 5 7 416 - -
Blo01g00789 416 Gene3D Classic Zinc Finger 115 191 - -
Blo01g00789 416 SUPERFAMILY beta-beta-alpha zinc fingers 50 76 IPR036236 -
Blo01g00789 416 PANTHER OS03G0310200 PROTEIN 7 416 IPR039288 GO:0009630
Blo01g00789 416 MobiDBLite consensus disorder prediction 189 225 - -
Blo01g00789 416 MobiDBLite consensus disorder prediction 189 209 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00789 Blo-Chr1:11529792 Blo15g00028 Blo-Chr15:234270 1.24E-102 dispersed
Blo15g00029 Blo-Chr15:235530 Blo01g00789 Blo-Chr1:11529792 3.52E-36 dispersed
Blo15g00207 Blo-Chr15:2133134 Blo01g00789 Blo-Chr1:11529792 4.40E-14 dispersed
Blo01g00789 Blo-Chr1:11529792 Blo13g00122 Blo-Chr13:2984275 5.50E-172 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11880 None None None None Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00789 K25871 - cpap:110823858 565.844