Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo01g00803 ATGTCATTCTCTCGTCGGAGCTCCGATCAAAGCCCCTCTTCCGATACTGCTTATTTTTATGATCATGTTCATACAACTGACCCTGCTCCGTCCAACTCCGAATGGAGCCTTCGATCTTTTGACGACGATTACGAGTCTCTGGATCAGGTAGCAGCTGCCCTGGCAGAAGCTGGTCTTGGACCTTCCAATCTCATCGTAGGCGTTGACTTCACTAGCAGCAATGCATGGACAAGAAAAGAGTCTTTCCACGGCAAGAATTTGCATCACCTCGGAGAGTTCGATCCTCTGAATCCGTACGAGCTGGCAATATCCGTTATCGGCCGGACCCTATCAAACTTCGACGAAGATAATCTCATTCCTTGTTATGGATTTGGTGATGCAACGACTAGTGATCAGCGTGTGTTTAGCTTTAATCAGGAAGACGATCCATGCCATGGTTTTGAACACGTCCTTGCTCGTTACAGGGAACTAGTTACTCGTGTTCGCCTGGCCGGTCCAACATCGTTTGCACCGATCATAGAGACTGCGATCGGAATCGTCGATCAAAGTGGCGGACAGTTCCACGTTCTGATGATCATAGCCGATGGACAGGTCACAAGAAGCGTTGAGATTGATGATAACCAGTTAAGTCCTCAAGAACAAAGCACCCTACAAACCATCAAAAAAGCCAGTTTGAGAATTTATACTCCAAACAAATATCCTCTGTCGATAATCGTCGTCGGAGTTGGGGACGGACCTTGGGACCAGATGTACGAATGTGACGACGGAGTTCGTTTCCGCGCTTTCGACAACGTCCAGTTCGTAAACTTTACCGAGATCATGATGATGAACATCCCACCGTCTAAGAAGGACACGCAATTCGCTCTTCAAGCACTAATGGAAGTTCCACATCAGTACAAGGCAATGAAGGCTCTTGGCCTATTGGGCAATCAAAGAGGGACAACATGGCCGTCCCCGCTCAATCTCCTGCTCAGGGACACCGTCTCATCGCACTCTTCTCGAGAGTTGAGTGGTGCTTCCTCCTCCGATGTATTTCATCTTTTTCGATCTCTTTCTATGAACCCATCAGCAAATAAGAAGGTAAGTTTGTGA 1092 47.71 MSFSRRSSDQSPSSDTAYFYDHVHTTDPAPSNSEWSLRSFDDDYESLDQVAAALAEAGLGPSNLIVGVDFTSSNAWTRKESFHGKNLHHLGEFDPLNPYELAISVIGRTLSNFDEDNLIPCYGFGDATTSDQRVFSFNQEDDPCHGFEHVLARYRELVTRVRLAGPTSFAPIIETAIGIVDQSGGQFHVLMIIADGQVTRSVEIDDNQLSPQEQSTLQTIKKASLRIYTPNKYPLSIIVVGVGDGPWDQMYECDDGVRFRAFDNVQFVNFTEIMMMNIPPSKKDTQFALQALMEVPHQYKAMKALGLLGNQRGTTWPSPLNLLLRDTVSSHSSRELSGASSSDVFHLFRSLSMNPSANKKVSL 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12348704 12350372 - BLOR00803 Blo01g00803 55243

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo01g00803 363 SMART VWA_4 61 270 IPR002035 -
Blo01g00803 363 Pfam Copine 87 308 IPR010734 -
Blo01g00803 363 PANTHER COPINE FAMILY PROTEIN 1 13 344 - -
Blo01g00803 363 PANTHER OS06G0608800 PROTEIN 13 344 - -
Blo01g00803 363 MobiDBLite consensus disorder prediction 1 34 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo01g00803 K16280 RGLG; E3 ubiquitin-protein ligase RGLG [EC:2.3.2.27] - rcu:8264770 373.244
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00803 Blo-Chr1:12348704 Blo17g00312 Blo-Chr17:3289629 1.27E-111 dispersed
Blo01g00803 Blo-Chr1:12348704 Blo11g00643 Blo-Chr11:6680168 1.03E-116 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g611 Blo01g00803 . Bda01g01762 . . . Bma14g01830 . . Cmo18g00725 . Cma18g00733 . . . Cpe09g00556 . Bhi07g01827 . . . . . . Cla05g02613 Cam05g2801 Cec05g2837 Cco05g2869 Clacu05g2804 Cmu05g2652 Cre05g2769 Cone13ag1094 . . . Lsi04g00627 Csa05g02262 Chy10g00832 Cme10g00600 . . Bda07g01646 . . Bpe02g01936 Bma01g00518 . . Cmo04g02800 . . . . . . . . . . . . . . . . . . . . . . . Chy09g00375 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011243 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 3 2 0 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo01g00803 Blo_Chr01 FPKM 58.602985 61.594799 52.576855 56.550205 15.950493 15.214469 18.804396 0.685744 0.797504 1.055642